PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462967626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Nin-like | ||||||||
Protein Properties | Length: 185aa MW: 21463.2 Da PI: 10.3234 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.3 | 4.7e-26 | 57 | 107 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +++e+++ +F++pik+AA+eL+v+lTvLK++CR++ I+RWPhRk+ksl 462967626 57 KKALTFEQVALHFNMPIKQAARELNVGLTVLKKRCRELHIPRWPHRKVKSL 107 789**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.802 | 43 | 128 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.3E-22 | 60 | 107 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
ELEALSDIED FTNIWPQIEY VYQKNKEGGC KKGSKLECGR VKRGKKMLQR QVGGLDKKAL 60 TFEQVALHFN MPIKQAAREL NVGLTVLKKR CRELHIPRWP HRKVKSLQTL INNVQELGHE 120 EGHLTRTVVE KLQQTKKLME ESPAMMLDAE TKVLRQACFK ENFKRKRLMG HGKCPWMALI 180 SDAER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462967626 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822796.1 | 1e-56 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 3e-35 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2S3GTB4 | 3e-55 | A0A2S3GTB4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FBK3 | 3e-55 | A0A2T7FBK3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QLV7 | 1e-55 | A0A3L6QLV7_PANMI; Protein RKD3-like | ||||
STRING | Pavir.Aa00708.1.p | 4e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-37 | RWP-RK domain-containing protein |