PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462967600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 814aa MW: 90703.3 Da PI: 6.3888 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 47 | 85 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d+ l +av+ + g++Wk+Ia++++ gRt+ qc +rwqk+l 462967600 47 DDMLRKAVETYNGKNWKKIAECFP-GRTDVQCLHRWQKVL 85 67899*******************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l 462967600 91 KGPWSKEEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.8 | 1.7e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l++a++++G++ W+ + ++ gRt++ +k++w+ 462967600 143 KEAWTQEEEIKLIHAHQMYGNK-WAELTKFLP-GRTDNAIKNHWH 185 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.3E-8 | 39 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 47 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-11 | 47 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-12 | 47 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.933 | 47 | 85 | IPR017877 | Myb-like domain |
CDD | cd00167 | 9.07E-11 | 47 | 85 | No hit | No description |
PROSITE profile | PS51294 | 32.04 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-18 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-15 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 98 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 141 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.125 | 142 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 143 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-11 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MAKLGAVGCA VVIAVVLRYH GRRAMDRLCW CVPGKGNFDR HSFGRMDDML RKAVETYNGK 60 NWKKIAECFP GRTDVQCLHR WQKVLNPELV KGPWSKEEDE IIIQMVNKLG PKKWSTIAQA 120 LPGRIGKQCR ERWHNHLNPG INKEAWTQEE EIKLIHAHQM YGNKWAELTK FLPGRTDNAI 180 KNHWHSSVKK KVDSYRASGL LGQFQGIAHV EYPAGSLNIA SSSAMSQQNS EDSGFNVVGE 240 VEGSTELSQS SLAKASCSQE EQIGSTLGSH FHAHESLCPE ECYTNADNDA SAVPEMQQQL 300 SISDNDQDTH LQHLSRTIDL PLDEQIARYE TSHFPDFHQV MEDNTCNNAS VDPDQHSYVS 360 SKDERDRAMD NLPESEKKKL IDVQQSSVEP TPTSGKETVS SHENTVASEK NDAEALCYEP 420 PYFPSYEVPF VRCDLISSSD LPEFSPLGIR ELMRSSLNFP TPVRLWSSPP RDGSPDAVLK 480 SAAKSFSSTP SIMKKRPREL LSPTADIRTE KNLMTEQNFG SLGMSSKRIR RSCIDTTDES 540 FHLFSPGDRT ASQQKKLKLF EENKENLKTT TNQDENEDNG KENLHSAGIL TQSNVDNLNT 600 PKHRPHHQSQ GLNTSTNALS NSIDIISSRS KPAELLVDKS PPCINAEFEY VNILADTPSI 660 KRGLESPSAW KSPLFSAFQS AYFMSPTARA FDALGLVKQI NEQSADALEE AHEVLASGSA 720 KNQHSKENSE KENIENTNYK NELTISKLPS KVMAEARVLD FNECSTPVRK KEDKKAESTI 780 GGPASSPLVP TYLRMNDLTL DAKCGPQAQR SSSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-62 | 47 | 192 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-62 | 47 | 192 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462967600 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174664.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | G9DR83 | 0.0 | G9DR83_WHEAT; R1R2R3-MYB protein | ||||
STRING | Traes_1AS_61D017632.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 7e-91 | myb domain protein 3r-4 |