PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967448
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 316aa    MW: 32192.4 Da    PI: 8.7905
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967448genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.5e-1776103128
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 
                C+nCgtt+TplWR+gp+g+k+LCnaCG+
  462967448  76 CANCGTTSTPLWRNGPRGPKSLCNACGI 103
                ***************************9 PP
2GATA65.27.4e-21193227135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++
  462967448 193 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 227
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-1170114IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.87770103IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-1272108No hitNo description
Gene3DG3DSA:3.30.50.101.1E-1472104IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-1175102No hitNo description
PROSITE patternPS00344076101IPR000679Zinc finger, GATA-type
PfamPF003201.1E-1476103IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-21187239IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.444187223IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-14189227No hitNo description
Gene3DG3DSA:3.30.50.101.4E-17191227IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.44E-14192224No hitNo description
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
PfamPF003201.9E-18193227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSASSTTFSL FFHSSITTSP SSPSSSAGSA VDCTLSLGTP SSRRAAESSS YYGHQGVKPA  60
GGRGAAAHDA FADRRCANCG TTSTPLWRNG PRGPKSLCNA CGISSITTSP SSPSSSAGSA  120
VDCTLSLGTP SSRRAAESVE QTMRVAPPAN AHPNVSAWDV AADHQSSYYG HQGVKPAGGR  180
GAAAHDAFAD RRCANCGTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAA ATAAMESGGS  240
AAGCGYSAQR AQYEYGAAAA KASPGAVSYG EGAFPCGGDA DANASFLAWR LNVVAPAPAP  300
AFAAMWPERT SLFQYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956964e-42FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810273.11e-55GATA transcription factor 15-like
SwissprotB8AX512e-45GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A3L6R8D08e-62A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.Ca00998.1.p1e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-22GATA transcription factor 19