PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462967448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GATA | ||||||||
Protein Properties | Length: 316aa MW: 32192.4 Da PI: 8.7905 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53 | 4.5e-17 | 76 | 103 | 1 | 28 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 C+nCgtt+TplWR+gp+g+k+LCnaCG+ 462967448 76 CANCGTTSTPLWRNGPRGPKSLCNACGI 103 ***************************9 PP | |||||||
2 | GATA | 65.2 | 7.4e-21 | 193 | 227 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++ 462967448 193 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 227 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-11 | 70 | 114 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.877 | 70 | 103 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-12 | 72 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 72 | 104 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.14E-11 | 75 | 102 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 76 | 101 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-14 | 76 | 103 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-21 | 187 | 239 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.444 | 187 | 223 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.09E-14 | 189 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-17 | 191 | 227 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.44E-14 | 192 | 224 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 193 | 218 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-18 | 193 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSASSTTFSL FFHSSITTSP SSPSSSAGSA VDCTLSLGTP SSRRAAESSS YYGHQGVKPA 60 GGRGAAAHDA FADRRCANCG TTSTPLWRNG PRGPKSLCNA CGISSITTSP SSPSSSAGSA 120 VDCTLSLGTP SSRRAAESVE QTMRVAPPAN AHPNVSAWDV AADHQSSYYG HQGVKPAGGR 180 GAAAHDAFAD RRCANCGTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAA ATAAMESGGS 240 AAGCGYSAQR AQYEYGAAAA KASPGAVSYG EGAFPCGGDA DANASFLAWR LNVVAPAPAP 300 AFAAMWPERT SLFQYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462967448 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095696 | 4e-42 | FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810273.1 | 1e-55 | GATA transcription factor 15-like | ||||
Swissprot | B8AX51 | 2e-45 | GAT15_ORYSI; GATA transcription factor 15 | ||||
TrEMBL | A0A3L6R8D0 | 8e-62 | A0A3L6R8D0_PANMI; GATA transcription factor 19-like | ||||
STRING | Pavir.Ca00998.1.p | 1e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 6e-22 | GATA transcription factor 19 |