PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967101
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 382aa    MW: 41661.6 Da    PI: 7.677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967101genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15169220155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  462967101 169 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 220
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.29852116IPR001471AP2/ERF domain
SMARTSM003803.1E-473122IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-885118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-886117IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18169229IPR016177DNA-binding domain
CDDcd000181.17E-23169230No hitNo description
PfamPF008472.3E-10169220IPR001471AP2/ERF domain
SMARTSM003804.4E-33170234IPR001471AP2/ERF domain
PROSITE profilePS5103219.019170228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-18170228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAAVNSAWGR RGAPGREATS SLCTASPSTR LGRGPHSTEA SPGTGGLGDM KPTSGTTAAK  60
EMGRQGKEDK SPSSRNIRFC FCTCAIGGYD TEDKAARAYD LAALKYWGPA THINFPVEQY  120
REELEEMEGM TRLEYVAHLR RSFFPLIYCF ISQVITADRR SSGFSRGASI YRGVTRHHQH  180
GRWQARIGRV AGNKDLYLGT YSTQEEAAEA YDIAAIKFRG LNAVTNFDIT RYDVEKIMES  240
NVLLPGEEAR RVKAIEPVHG ESARHNGGRE LNQSGEASTE WRMVLHGASQ EAVPCVEAAD  300
HQKSVMGDPH SSLHGIADLD FSNSSSLVTS LGNSREGSPE RLGPAMLYAK HPDAAVSLAT  360
MNPWMQMPAP HLVRPGNVSH LP
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967101
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4585193e-74AB458519.1 Triticum aestivum WANT1-2 mRNA for AP2 transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318293.11e-139AP2-like ethylene-responsive transcription factor ANT isoform X1
RefseqXP_021318295.11e-139AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z022e-89CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9NXM71e-152A0A0A9NXM7_ARUDO; Uncharacterized protein
STRINGSb01g042090.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.18e-77AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]