PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462967047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 37670.9 Da PI: 8.6559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42 | 1.5e-13 | 274 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd C+FaHg 462967047 274 FKTELCNKWEATGACSYGDLCQFAHG 299 79***********************8 PP | |||||||
2 | zf-CCCH | 18.2 | 4.4e-06 | 312 | 337 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykt Cr+ ++ G C++G rC+F H+ 462967047 312 YKTGVCRTVLA-GvLCPFGHRCHFRHS 337 99*********.66**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-15 | 268 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-9 | 270 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.615 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-8 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-10 | 307 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-7 | 308 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.174 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEALLPAAQH EGLHAAFGHM PFGLGDGRFS SPNLLTNGGD LFWGGYYPHP FGIVPVHCYS 60 ASPSPRTASR SRSSSDTSSV LDVGDDSPAA LARLALHSVL DVGDDSPAAL VRLALKYQEA 120 AGRYHLFLSH LVDTTYGEVA LRRENDLLRS ATVDLVRRIV LVGGKHSSAI ALADEFRRLT 180 HAEQKVKAMP SPPSTPVVMR PVPAETPKSI SIRSAVYLKM KQSGKHRVSK ATNGGAERVF 240 VDVDGGAKEE EKKDAKEEQG AGGLDFEVYT QGMFKTELCN KWEATGACSY GDLCQFAHGI 300 AQLRPVVRHP RYKTGVCRTV LAGVLCPFGH RCHFRHSIAP ADGHLLRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-20 | 274 | 337 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462967047 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808834.1 | 1e-109 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q6L5G1 | 1e-101 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A3L6R9Y5 | 1e-110 | A0A3L6R9Y5_PANMI; Zinc finger CCCH domain-containing protein 39-like | ||||
STRING | Si022648m | 1e-108 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 4e-44 | C3H family protein |
Publications ? help Back to Top | |||
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