PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966935
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 703aa    MW: 76489.1 Da    PI: 4.399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966935genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.5e-53671951129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+ykvePwdLp+  ++++++++wyfFs+ d+k+++  r+nrat+ gyWk+tgkd+ev + + +
  462966935  67 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHSNRARTNRATAGGYWKTTGKDREVRH-GPR 164
                579***************************.99***************4357888999**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvf++grapkge+t+Wvmheyrle
  462966935 165 IVGMKKTLVFHSGRAPKGERTNWVMHEYRLE 195
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-6162215IPR003441NAC domain
PROSITE profilePS5100559.35167215IPR003441NAC domain
PfamPF023651.8E-2869194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
KAPGLSYSPS HLVSLLPQPF PNPIPSLPLQ SPSNPSRRGP FMTLVPSSSN LALPPPDAAA  60
AEDATSLAPG FRFHPTDEEL VSYYLKRKVL GRPLKVDAIA EVDLYKVEPW DLPARSRLRS  120
RDSQWYFFSR LDRKHSNRAR TNRATAGGYW KTTGKDREVR HGPRIVGMKK TLVFHSGRAP  180
KGERTNWVMH EYRLEGEEAA GIPQDSFVVC RIFQKAGPGP QNGAQYGAPF VEEEWEEEDE  240
NVGLLPLGGD AAADAIAEHK VPGAMEKGYL QMSDLIQGLG DQNGNGTIGL PVSDTSNSSN  300
HSEDVDGSSG DILNDPNLGS NFLQYLDPGE QNSLMFNGNM LSNASSGTFF HTSSPSDGFL  360
ELKDFADAAS LEYPLGDDSI VWPSDGWAWK TPDSFEAVNG ANNEIPPLPD NQTFQSEELE  420
QLLQSIQEDS HLGSSIIDPP HSSMTNSVMA EDDSLMFYDA PFDSTVCDEG FRQFNGIHDS  480
PTTNVSGIDM VDDGIPYYDA MDDNLFNDIL GSIQQPAGSN SHAFNGPILT QEVNNTIYTY  540
SPAQKVLEPN FVVGAQSARL PEAGSQLNCV VLPDGQAKSS TSGKIFVKLL DSISAPPAFA  600
SDEFPSDFSK TFAPISGARP NTFHVSAEVI SIGSLAVASR PDKWDVQKDQ GMELLFTGFE  660
PETRMHCGCN TITAVLRGGF CLFFFSAIML LVSYEVGLCI YGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47612159168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGPavir.Fa00048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-81NAC domain containing protein 2