PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462966920

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 599aa MW: 68079.7 Da PI: 7.4921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966920	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.5e-16	191	261	1	77
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 ++Y +YA +vGFsvrk ks ++ +r +vCs+eg+r++++ k r+r etr+gC a++ +k++ +gk++ 462966920 191 EYYVSYAGDVGFSVRKGWWDKSAKSS-SRSRVYVCSREGFRSNNEAK-----RPRLETRMGCPARIAIKLTPRGKYR 261 69*****************95555.99*********98777.....*****************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-13	191	261	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.151	390	437	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-4	410	434	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-4	412	439	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MAAPSTSGEP ASDGEPPPSD PSQRRHPTSR ISHIVRTYLD LSSSSKKRRA APKNQPKAGG 60 QEMHAIGDEI DRGMAVEPSA QPSRLLRELG IRVSRYTHEE RRDIILRYMQ KRSGRQVVNR 120 AASKIPSRQA LAERRRRGAG GKFLGKEDPQ TADKPEEKVD EEPELPPEVV SNAGGVPIVG 180 MVFESEEKAY EYYVSYAGDV GFSVRKGWWD KSAKSSSRSR VYVCSREGFR SNNEAKRPRL 240 ETRMGCPARI AIKLTPRGKY RDEQEFVNTW NVVMEKYSLK ENEWLIKLYE DRENWALPYI 300 RQIFSGDIKS MLLAENFGTR LEYSAEKRRQ EEMQADYQAN QGAPRISVPL LWQAANVYTP 360 IIFDLFRKEY ELSIGCMVYG CGEFGSLSEY MITIRNRSKD QLVRFDSSDG TVACTCKKFE 420 NSGLLCCHIL KVYELRNVKE IPLQYFLKRW RKDAKLVDET DEFNFDSDTR LSVPGRYVAL 480 CRLFYKIAAK AAENIETSAL MTGQSEELLS EGHYVLGHNF DLGSSQNLHD NLNQFDQVVF 540 MSNVSSVSTL QQQPFPGNGQ LTQGYPGDMH SLQFVGTNPE MDHQSDDQGQ SAIPVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MAAPSTSGEP ASDGEPPPSD PSQRRHPTSR ISHIVRTYLD LSSSSKKRRA APKNQPKAGG  60
QEMHAIGDEI DRGMAVEPSA QPSRLLRELG IRVSRYTHEE RRDIILRYMQ KRSGRQVVNR  120
AASKIPSRQA LAERRRRGAG GKFLGKEDPQ TADKPEEKVD EEPELPPEVV SNAGGVPIVG  180
MVFESEEKAY EYYVSYAGDV GFSVRKGWWD KSAKSSSRSR VYVCSREGFR SNNEAKRPRL  240
ETRMGCPARI AIKLTPRGKY RDEQEFVNTW NVVMEKYSLK ENEWLIKLYE DRENWALPYI  300
RQIFSGDIKS MLLAENFGTR LEYSAEKRRQ EEMQADYQAN QGAPRISVPL LWQAANVYTP  360
IIFDLFRKEY ELSIGCMVYG CGEFGSLSEY MITIRNRSKD QLVRFDSSDG TVACTCKKFE  420
NSGLLCCHIL KVYELRNVKE IPLQYFLKRW RKDAKLVDET DEFNFDSDTR LSVPGRYVAL  480
CRLFYKIAAK AAENIETSAL MTGQSEELLS EGHYVLGHNF DLGSSQNLHD NLNQFDQVVF  540
MSNVSSVSTL QQQPFPGNGQ LTQGYPGDMH SLQFVGTNPE MDHQSDDQGQ SAIPVWDFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976809.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1E5VW07	0.0	A0A1E5VW07_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRING	ORGLA04G0223700.1	1e-138	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-26	FAR1-related sequence 12