PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966703
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 677aa    MW: 72678.7 Da    PI: 6.7338
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966703genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.2e-28201254155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  462966703 201 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 254
                79*******************.********************************8 PP
2Response_reg79.89.3e-27181261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ + +l+++l + +y +v+++ +++ al +l+e++  +D+i+ D+ mp+mdG++ll++   e  +lp+i+++a ++ +++ + +k Ga 
     462966703  18 VLVVDDDPTCLLVLKKMLVECKY-DVTTCPQATRALSMLRENRrgFDVIISDVHMPDMDGFRLLEQVGLEM-DLPVIMMSADSSTNTVMKGIKHGAC 112
                   89*********************.***************99999***********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462966703 113 DYLIKPVRMEELRN 126
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.9E-1801660IPR017053Response regulator B-type, plant
SuperFamilySSF521724.55E-3715143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.6E-4415159No hitNo description
SMARTSM004484.5E-3216128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.98517132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2418127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.01E-2719131No hitNo description
SuperFamilySSF466898.96E-20198258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29198259IPR009057Homeodomain-like
PROSITE profilePS5129411.674198257IPR017930Myb domain
TIGRFAMsTIGR015573.0E-25201254IPR006447Myb domain, plants
PfamPF002497.7E-7203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAAAAEARGA DFPVGMKVLV VDDDPTCLLV LKKMLVECKY DVTTCPQATR ALSMLRENRR  60
GFDVIISDVH MPDMDGFRLL EQVGLEMDLP VIMMSADSST NTVMKGIKHG ACDYLIKPVR  120
MEELRNIWQH VVRKKWSENK DHEHSGSLDD TDRNRLTNND NEYASSANDV GDGSWKSQKK  180
KRDKEEDEGD ENGDPSSTSK KPRVVWSVEL HQQFVNAVNH LGIDKAVPKK ILELMNVPGL  240
TRENVASHLQ KFRLYLKRIA QHHAGMAHPF VPSASNAKVA PLGGLELQAL AASGQIPPQA  300
LAALQDELLG RPTSSLALPG RDQSSLRLAA IKGNKPHGER EIAFGQPIYK CQNNAYGAFP  360
QSSPAMGGMP SFAAWPSNKH GMTDSGNTLG SLNNSQNSTM LLQELQQQPD SLLPGTLHSI  420
DVKPSGIVMP SQSLNTFPAS DGLSPHQNPL VISPQSSSFL GAVPPMKHEP LMTTSQQSSS  480
LLGGIDLVNQ ASTSQPLINT HGGNLAGLMN RNSNVMSSQG MTNFQSGNNP YVANQNAVGV  540
SSKPPGVLKT ESTDSLRNSY GYIGGNTSMD SGLLSQSKNP QYGLLQSTDD VSGGWSLQNI  600
DSYGSPLGPG QSGSNVALGK LLDQGRGRNH GFVGKGTCIP SRFAVDEIES PTNNLSHSIG  660
SSGDLGNPDI FGFSGQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24197260164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A3L6SBE00.0A0A3L6SBE0_PANMI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2