PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462966312

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GeBP

Protein Properties

Length: 490aa MW: 53217.4 Da PI: 8.2743

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966312	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	29.9	1.5e-09	157	244	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 r ws+eD i +L +l + +++g++ + ++ v+++++ + + +++ e +r+LK ++ k vk+ g ps +e++ + + ls+ iWg 462966312 157 PRTWSKEDLIKILEALAEHVNSKGVQ--PKTATLIAAVSDRLDRkDCKYTEMYEIVRSLKARYDKAVKT---GVVPS--AEDELQRYSLSEAIWG 244 699*******************66..568899**9986267889************999...55554..5555688******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-13	157	244	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MCDPAAPAPQ PESDSDDDEE EDGESSESEP EVPEPTQKKA AVAASAKKSK TAEQEDKKRP 60 APEPAVSGKS KKAKAEAEKA APEVTPTGKA KKAKSEAEKA APEVTSTSKV KKAKAEPEKA 120 PPEPTSSGKV NKPGGKLEKA VSDPSPSSKT EKPGRAPRTW SKEDLIKILE ALAEHVNSKG 180 VQPKTATLIA AVSDRLDRKD CKYTEMYEIV RSLKARYDKA VKTGVVPSAE DELQRYSLSE 240 AIWGDKAKEA IAAAASQNDG NVTKSKKGQA KKEKMDGNSK GGTLKEVAIE NGDTQKGNKK 300 GQAIEKKTDR DVKDKASKED TTTATPSKSK KQGKHQEESG KDAKIGTSKQ TTTTATQNGD 360 ALTNHKRGKT DKENMEIDTE TLMPKEASTA VHNTMEEETH EEETEREPRA RRSFDELQNL 420 YPNLAWCVEM IEAQHPCGET LKRAFDFIGD DKASALESKA KKQRILEVKA QMRRGDLRKE 480 VLNVVIGMGD

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MCDPAAPAPQ PESDSDDDEE EDGESSESEP EVPEPTQKKA AVAASAKKSK TAEQEDKKRP  60
APEPAVSGKS KKAKAEAEKA APEVTPTGKA KKAKSEAEKA APEVTSTSKV KKAKAEPEKA  120
PPEPTSSGKV NKPGGKLEKA VSDPSPSSKT EKPGRAPRTW SKEDLIKILE ALAEHVNSKG  180
VQPKTATLIA AVSDRLDRKD CKYTEMYEIV RSLKARYDKA VKTGVVPSAE DELQRYSLSE  240
AIWGDKAKEA IAAAASQNDG NVTKSKKGQA KKEKMDGNSK GGTLKEVAIE NGDTQKGNKK  300
GQAIEKKTDR DVKDKASKED TTTATPSKSK KQGKHQEESG KDAKIGTSKQ TTTTATQNGD  360
ALTNHKRGKT DKENMEIDTE TLMPKEASTA VHNTMEEETH EEETEREPRA RRSFDELQNL  420
YPNLAWCVEM IEAQHPCGET LKRAFDFIGD DKASALESKA KKQRILEVKA QMRRGDLRKE  480
VLNVVIGMGD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966312

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	1e-149	recombination repair protein 1-like
TrEMBL	A0A3L6QKN4	1e-154	A0A3L6QKN4_PANMI; Hepatoma-derived growth factor-related protein 2-like
STRING	Pavir.Ab01142.1.p	1e-150	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37