PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462966017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31303.8 Da PI: 10.0855 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.4e-07 | 35 | 59 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H 462966017 35 KSKPCTKFFSTAGCPFGASCHFLHN 59 7789********************7 PP | |||||||
2 | zf-CCCH | 20 | 1.2e-06 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck G++C+FaHg+ 462966017 101 KTRMCNKFNTAEGCKWGSKCHFAHGE 126 89**********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +G+rC+FaHg+ 462966017 266 FKTKLCDNFNK-GSCTFGERCHFAHGE 291 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.3 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-8 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.821 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.82 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 1.3E-9 | 170 | 240 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.592 | 171 | 235 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-14 | 171 | 239 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 4.68E-14 | 173 | 266 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.15E-12 | 173 | 235 | No hit | No description |
Pfam | PF00013 | 1.6E-10 | 173 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-16 | 263 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-8 | 265 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDPGRKRTAP EGTNGAGGAK RQRELETSQM GVGSKSKPCT KFFSTAGCPF GASCHFLHNF 60 PGGYQAVAKM TNLGGPPVPS PMGRMPMGPG VPDGPPTPSV KTRMCNKFNT AEGCKWGSKC 120 HFAHGERELG KPMPMDNTMG GPPMGPGPNG HFMPPPMPMP DMVPPSTFGA SATAKISVDA 180 SLAGGIIGKG GTNTKHISRV TGAKLAIRDN EADPNLKNIE LEGTFDQIKH ASAMVTELIV 240 RIGGKVPQQA KNPGRGSHAG GPGSNFKTKL CDNFNKGSCT FGERCHFAHG EGELRKPAAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462966017 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810913.1 | 0.0 | zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q69XQ3 | 1e-170 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A3L6S111 | 0.0 | A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1 | ||||
STRING | Pavir.J02805.1.p | 1e-180 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-43 | C3H family protein |