PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462964844

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 274aa MW: 30087.9 Da PI: 8.8937

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462964844	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	6.1e-52	6	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdeel+ +yL+k+++++++++ vi+evdiyk++PwdLp+k+ +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+ 462964844 6 LPPGFRFHPTDEELILHYLRKRAAATPCPA-PVIAEVDIYKFDPWDLPAKAVFGEGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPITSSaaers 104 79*************************9.89***********87778899**********************************977766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfy+gr pkg kt+W+mheyrl 462964844 105 SSAMIGVKKALVFYRGRPPKGMKTSWIMHEYRL 137 6666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-64	4	170	IPR003441	NAC domain
PROSITE profile	PS51005	61.313	6	170	IPR003441	NAC domain
Pfam	PF02365	4.3E-27	7	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMPNPLPPGF RFHPTDEELI LHYLRKRAAA TPCPAPVIAE VDIYKFDPWD LPAKAVFGEG 60 EWYFFSPRDR KYPNGVRPNR AAGSGYWKAT GTDKPITSSA AERSSSAMIG VKKALVFYRG 120 RPPKGMKTSW IMHEYRLADA LNAANTYRPM RFKNASMRLD DWVLCRIYKK TTPQLTYSSS 180 PPLDADEPLM DGAGFTSHGQ QHGNSAAYAD DVAGGQLPRP PSISDYLVDY AMSELFESAP 240 APQLGTDAGS SGGAAAQFFI GNDSSGVQQS SHKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-71	6	172	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-71	6	172	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-71	6	172	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-71	6	172	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-71	6	172	20	170	NAC domain-containing protein 19
3swm_B	5e-71	6	172	20	170	NAC domain-containing protein 19
3swm_C	5e-71	6	172	20	170	NAC domain-containing protein 19
3swm_D	5e-71	6	172	20	170	NAC domain-containing protein 19
3swp_A	5e-71	6	172	20	170	NAC domain-containing protein 19
3swp_B	5e-71	6	172	20	170	NAC domain-containing protein 19
3swp_C	5e-71	6	172	20	170	NAC domain-containing protein 19
3swp_D	5e-71	6	172	20	170	NAC domain-containing protein 19
4dul_A	5e-71	6	172	17	167	NAC domain-containing protein 19
4dul_B	5e-71	6	172	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462964844

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972600	1e-142	EU972600.1 Zea mays clone 384237 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816084.1	1e-121	NAC transcription factor 29-like
Swissprot	A0SPJ6	2e-85	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	Q8H4S4	6e-85	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A1E5UWU9	1e-121	A0A1E5UWU9_9POAL; NAC transcription factor NAM-B2
STRING	Pavir.Ea00837.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	9e-85	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]