PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462964340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18467.8 Da PI: 6.5113 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.4e-36 | 17 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCvl+pyfpa+qp+++a vh +FG+sn ++ll++lp +er +a+++++ eA++r++dPvyG++g+i +lqqq++ ++ +la+++++ 462964340 17 RCAACKYLRRRCAPDCVLSPYFPASQPRRYADVHAVFGTSNATRLLQSLPVQERGRAADTMATEARWRVQDPVYGSAGIIDRLQQQIRAAQRDLATTRAQ 116 6**********************************************************************************************99987 PP DUF260 101 l 101 l 462964340 117 L 117 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.272 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-36 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSSSGSIAGN NNPWTRRCAA CKYLRRRCAP DCVLSPYFPA SQPRRYADVH AVFGTSNATR 60 LLQSLPVQER GRAADTMATE ARWRVQDPVY GSAGIIDRLQ QQIRAAQRDL ATTRAQLAFP 120 PPPSTLLLPP PAAAASAIDG GRLLAVRHEE EEEEAPPMDP DEFLDLGDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-32 | 18 | 117 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-32 | 18 | 117 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462964340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 3e-65 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 3e-36 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 3e-36 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | K3YMP0 | 2e-66 | K3YMP0_SETIT; Uncharacterized protein | ||||
STRING | Si015521m | 3e-67 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 9e-38 | LOB domain-containing protein 23 |