PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462964109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 602aa MW: 66337.8 Da PI: 8.0375 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.6e-16 | 68 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEde l +av + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l 462964109 68 KGGWTTEEDETLHRAVDAFDGRHWKKIAEFLP-HRTEVQCLHRWQKVL 114 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.5 | 3.5e-19 | 120 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d vk++G++ W+ Ia+ + gR +kqc++rw+++l 462964109 120 KGPWTQEEDDIIIDMVKKHGPKKWSVIAKSLD-GRIGKQCRERWHNHL 166 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 53.4 | 5.9e-17 | 172 | 214 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w+ 462964109 172 KEAWTVEEERVLANAHRVYGNK-WAEIAKLLP-GRTDNSIKNHWN 214 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.109 | 63 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-14 | 67 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 68 | 114 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.36E-14 | 69 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 70 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-12 | 71 | 114 | No hit | No description |
PROSITE profile | PS51294 | 32.246 | 115 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-31 | 117 | 213 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-18 | 119 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 120 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-15 | 122 | 166 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 123 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-22 | 170 | 221 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.906 | 171 | 221 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-16 | 171 | 219 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 172 | 214 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-12 | 174 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MGAMPAVKVE EGDGAAGNWG NLAAWSPLES ASEAASYGGG APMSPVLSSP MDSDSGRRRT 60 SGPVRRAKGG WTTEEDETLH RAVDAFDGRH WKKIAEFLPH RTEVQCLHRW QKVLNPELRK 120 GPWTQEEDDI IIDMVKKHGP KKWSVIAKSL DGRIGKQCRE RWHNHLDPQI RKEAWTVEEE 180 RVLANAHRVY GNKWAEIAKL LPGRTDNSIK NHWNCSLKKR LGNYNTNIDL PASMHTIQNC 240 LKHVKQPIAG NHIDLNKDPN INLRDPPEIA DHSECTSHLH ACNLKGVKSC SGFLSLSLPT 300 GQPEIPWKAL AAEDSAAALA MQGLKLNAVD DKGTEINFLC EEGIPQFGRA TEKIVSSGSA 360 RPERKTSMNL CELTLRNESS SFGSLCYQIP KLDDIVPAHS PVFSRHHVQE HSGDGFQSPI 420 GYSTYSPMDG SISDQRSVES ILKSAAENFP GTPSILRRRK REKPMDAQES NLKIDILNGD 480 SFHTPLGKCS TGSPHSFKTA TFLSLGPPNG EGLSAALGSV DVSPAYRLRS KRMAVLKSVE 540 KHLDFSDGMD NCSADTVKST SWNTACTNSS TDVSSWPEKN MRKHMFGLET LAKDFAHIPK 600 LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 67 | 221 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 67 | 221 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 456 | 463 | RRRKREKP |
2 | 457 | 462 | RRKREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462964109 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809062.1 | 0.0 | transcription factor MYB3R-2-like isoform X1 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0A9DCG7 | 0.0 | A0A0A9DCG7_ARUDO; Uncharacterized protein | ||||
STRING | Si021484m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-98 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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