PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462964109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 602aa    MW: 66337.8 Da    PI: 8.0375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462964109genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-1668114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEde l +av  + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l
        462964109  68 KGGWTTEEDETLHRAVDAFDGRHWKKIAEFLP-HRTEVQCLHRWQKVL 114
                      688*****************************.************986 PP

2Myb_DNA-binding60.53.5e-19120166148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d vk++G++ W+ Ia+ +  gR +kqc++rw+++l
        462964109 120 KGPWTQEEDDIIIDMVKKHGPKKWSVIAKSLD-GRIGKQCRERWHNHL 166
                      79******************************.*************97 PP

3Myb_DNA-binding53.45.9e-17172214145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
        462964109 172 KEAWTVEEERVLANAHRVYGNK-WAEIAKLLP-GRTDNSIKNHWN 214
                      579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.10963114IPR017930Myb domain
SMARTSM007173.2E-1467116IPR001005SANT/Myb domain
PfamPF002493.9E-1368114IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-1469124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-2270122IPR009057Homeodomain-like
CDDcd001672.72E-1271114No hitNo description
PROSITE profilePS5129432.246115170IPR017930Myb domain
SuperFamilySSF466892.02E-31117213IPR009057Homeodomain-like
SMARTSM007175.6E-18119168IPR001005SANT/Myb domain
PfamPF002491.9E-17120166IPR001005SANT/Myb domain
CDDcd001671.22E-15122166No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26123169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-22170221IPR009057Homeodomain-like
PROSITE profilePS5129420.906171221IPR017930Myb domain
SMARTSM007175.6E-16171219IPR001005SANT/Myb domain
PfamPF002497.1E-15172214IPR001005SANT/Myb domain
CDDcd001672.94E-12174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MGAMPAVKVE EGDGAAGNWG NLAAWSPLES ASEAASYGGG APMSPVLSSP MDSDSGRRRT  60
SGPVRRAKGG WTTEEDETLH RAVDAFDGRH WKKIAEFLPH RTEVQCLHRW QKVLNPELRK  120
GPWTQEEDDI IIDMVKKHGP KKWSVIAKSL DGRIGKQCRE RWHNHLDPQI RKEAWTVEEE  180
RVLANAHRVY GNKWAEIAKL LPGRTDNSIK NHWNCSLKKR LGNYNTNIDL PASMHTIQNC  240
LKHVKQPIAG NHIDLNKDPN INLRDPPEIA DHSECTSHLH ACNLKGVKSC SGFLSLSLPT  300
GQPEIPWKAL AAEDSAAALA MQGLKLNAVD DKGTEINFLC EEGIPQFGRA TEKIVSSGSA  360
RPERKTSMNL CELTLRNESS SFGSLCYQIP KLDDIVPAHS PVFSRHHVQE HSGDGFQSPI  420
GYSTYSPMDG SISDQRSVES ILKSAAENFP GTPSILRRRK REKPMDAQES NLKIDILNGD  480
SFHTPLGKCS TGSPHSFKTA TFLSLGPPNG EGLSAALGSV DVSPAYRLRS KRMAVLKSVE  540
KHLDFSDGMD NCSADTVKST SWNTACTNSS TDVSSWPEKN MRKHMFGLET LAKDFAHIPK  600
LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67672215159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67672215159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456463RRRKREKP
2457462RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462964109
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.10.0transcription factor MYB3R-2-like isoform X1
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0A9DCG70.0A0A0A9DCG7_ARUDO; Uncharacterized protein
STRINGSi021484m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-98myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]