PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462964107
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 579aa    MW: 63615.6 Da    PI: 7.926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462964107genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-1068104138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      +g WTteEde l +av  + g++Wk+Ia+ ++ +Rt++
        462964107  68 KGGWTTEEDETLHRAVDAFDGRHWKKIAEFLP-HRTEE 104
                      688*****************************.***87 PP
2Myb_DNA-binding47.73.5e-15102143648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      teEd++++d vk++G++ W+ Ia+ +  gR +kqc++rw+++l
        462964107 102 TEEDDIIIDMVKKHGPKKWSVIAKSLD-GRIGKQCRERWHNHL 143
                      8**************************.*************97 PP
3Myb_DNA-binding53.55.7e-17149191145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w+
        462964107 149 KEAWTVEEERVLANAHRVYGNK-WAEIAKLLP-GRTDNSIKNHWN 191
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-765104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-965102IPR009057Homeodomain-like
SMARTSM007175.467101IPR001005SANT/Myb domain
PROSITE profilePS5129415.07489143IPR017930Myb domain
PfamPF002493.9E-13102143IPR001005SANT/Myb domain
SMARTSM007179.1E-9102145IPR001005SANT/Myb domain
CDDcd001671.35E-12103143No hitNo description
Gene3DG3DSA:1.10.10.601.8E-22103149IPR009057Homeodomain-like
SuperFamilySSF466891.09E-27122204IPR009057Homeodomain-like
PROSITE profilePS5129424.745144198IPR017930Myb domain
SMARTSM007175.6E-16148196IPR001005SANT/Myb domain
PfamPF002496.7E-15149191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-22150198IPR009057Homeodomain-like
CDDcd001672.61E-12151191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGAMPAVKVE EGDGAAGNWG NLAAWSPLES ASEAASYGGG APMSPVLSSP MDSDSGRRRT  60
SGPVRRAKGG WTTEEDETLH RAVDAFDGRH WKKIAEFLPH RTEEDDIIID MVKKHGPKKW  120
SVIAKSLDGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL ANAHRVYGNK WAEIAKLLPG  180
RTDNSIKNHW NCSLKKRLGN YNTNIDLPAS MHTIQNCLKH VKQPIAGNHI DLNKDPNINL  240
RDPPEIADHS ECTSHLHACN LKGVKSCSGF LSLSLPTGQP EIPWKALAAE DSAAALAMQG  300
LKLNAVDDKG TEINFLCEEG IPQFGRATEK IVSSGSARPE RKTSMNLCEL TLRNESSSFG  360
SLCYQIPKLD DIVPAHSPVF SRHHVQEHSG DGFQSPIGYS TYSPMDGSIS DQRSVESILK  420
SAAENFPGTP SILRRRKREK PMDAQESNLK IDILNGDSFH TPLGKCSTGS PHSFKTATFL  480
SLGPPNGEGL SAALGSVDVS PAYRLRSKRM AVLKSVEKHL DFSDGMDNCS ADTVKSTSWN  540
TACTNSSTDV SSWPEKNMRK HMFGNIWQSA EVGKKTWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-47671985159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-47671985159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433440RRRKREKP
2434439RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462964107
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.10.0transcription factor MYB3R-2-like isoform X1
SwissprotQ0JHU71e-166MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0A9DCG70.0A0A0A9DCG7_ARUDO; Uncharacterized protein
STRINGSi021484m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-75myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]