PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 797aa MW: 88587.5 Da PI: 6.5455 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.7e-15 | 151 | 245 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+lt sd++++g +++p++ ae+ ++ s +l+++s ++ + +++s+ ++lt+GW+ Fv+a++L +gD+v+F ++++ +l++++ 462963347 151 FCKTLTASDTSTHGGFSVPRRAAERVfpPLV--IS-HSSLQHRSLLHETFMM--WNGSQPkrHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGI 243 99**********************9977444..22.3567788888888888..55555445*************************..88899999999 PP E- CS B3 97 fr 98 +r 462963347 244 RR 245 98 PP | |||||||
2 | Auxin_resp | 102 | 7.4e-34 | 258 | 347 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPra......stseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPra s+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k 462963347 258 AAHAAATNSRFTIFYNPRAkspcraSPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 347 79***************8533333378************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-26 | 136 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-24 | 143 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.44E-13 | 150 | 245 | No hit | No description |
Pfam | PF02362 | 4.2E-13 | 151 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-10 | 151 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.587 | 151 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-29 | 258 | 347 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.03E-5 | 724 | 795 | No hit | No description |
PROSITE profile | PS51745 | 22.472 | 726 | 797 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MVAISELGFW FRSWEMSSSS AASIGQPPPA PPPAAPPEEE KKCLNSELWH ACAGPLVCLP 60 TVGTRVVYFP QGHSEQVAAS TNKEVDGHIP NYPNLPPQLI CQLHDVTMHA DVETDEVYAQ 120 MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR RAAERVFPPL 180 VISHSSLQHR SLLHETFMMW NGSQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL 240 LGIRRACRSM HIGLLAAAAH AAATNSRFTI FYNPRAKSPC RASPSEFVIP LSKYIKAVFH 300 TRISVGMRFR MLFETEESSV RRYMGTITEV SDADPVRWPS SYWRSVKVGW DESTAGERPP 360 RVSLWEIEPL TTFPMYPSLF PLRVKHPWYS GVAGLHDDSS ALMWLRGVAG EGGFQSLNFQ 420 SPGIGSWGQQ RLHPSLLSTE HDQYQAVVAA AAASQSGGYL KQQFLHLQQP MQAPQEQCNL 480 NPLLQQQILQ QASQQQIVSP EAQNIQSVLS PSAIQQQLHQ IQQMQHAHND QKRKIQHDQT 540 YQVPSSEVLP SPTSLPSHLR EKFGFSDPNL NSSSFVSSSS NESMLESNFL QGSSKSVDLA 600 RFNQPVVSEQ QQQQQQQQQA AWKQKFLGSQ SMPFGGSVSL NSPTGKDGSV ENKIGRDVQN 660 QSLFSPQVDS SSLLYNMVPN LTSNVADNNV STIPSGSTYL QNAMYGCLDD SSGLLQNTGE 720 NDPTARTFVK VYKSGSVGRS LDITRFSNYA ELREELGQMF GIRGQLDDPD RSGWQLVFVD 780 RENDALLLGD DPWELPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-128 | 40 | 368 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963347 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348616.1 | 0.0 | uncharacterized protein LOC100382863 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | K3Z3V5 | 0.0 | K3Z3V5_SETIT; Auxin response factor | ||||
STRING | Sb06g032500.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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