PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963347
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 797aa    MW: 88587.5 Da    PI: 6.5455
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963347genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-15151245198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k+lt sd++++g +++p++ ae+    ++   s   +l+++s    ++ +  +++s+   ++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++++
  462963347 151 FCKTLTASDTSTHGGFSVPRRAAERVfpPLV--IS-HSSLQHRSLLHETFMM--WNGSQPkrHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGI 243
                99**********************9977444..22.3567788888888888..55555445*************************..88899999999 PP

                E- CS
         B3  97 fr 98 
                +r
  462963347 244 RR 245
                98 PP

2Auxin_resp1027.4e-34258347183
  Auxin_resp   1 aahaastksvFevvYnPra......stseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPra      s+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
   462963347 258 AAHAAATNSRFTIFYNPRAkspcraSPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 347
                 79***************8533333378************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-26136249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-24143248IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-13150245No hitNo description
PfamPF023624.2E-13151246IPR003340B3 DNA binding domain
SMARTSM010194.7E-10151247IPR003340B3 DNA binding domain
PROSITE profilePS508639.587151247IPR003340B3 DNA binding domain
PfamPF065072.8E-29258347IPR010525Auxin response factor
SuperFamilySSF542772.03E-5724795No hitNo description
PROSITE profilePS5174522.472726797IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MVAISELGFW FRSWEMSSSS AASIGQPPPA PPPAAPPEEE KKCLNSELWH ACAGPLVCLP  60
TVGTRVVYFP QGHSEQVAAS TNKEVDGHIP NYPNLPPQLI CQLHDVTMHA DVETDEVYAQ  120
MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR RAAERVFPPL  180
VISHSSLQHR SLLHETFMMW NGSQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL  240
LGIRRACRSM HIGLLAAAAH AAATNSRFTI FYNPRAKSPC RASPSEFVIP LSKYIKAVFH  300
TRISVGMRFR MLFETEESSV RRYMGTITEV SDADPVRWPS SYWRSVKVGW DESTAGERPP  360
RVSLWEIEPL TTFPMYPSLF PLRVKHPWYS GVAGLHDDSS ALMWLRGVAG EGGFQSLNFQ  420
SPGIGSWGQQ RLHPSLLSTE HDQYQAVVAA AAASQSGGYL KQQFLHLQQP MQAPQEQCNL  480
NPLLQQQILQ QASQQQIVSP EAQNIQSVLS PSAIQQQLHQ IQQMQHAHND QKRKIQHDQT  540
YQVPSSEVLP SPTSLPSHLR EKFGFSDPNL NSSSFVSSSS NESMLESNFL QGSSKSVDLA  600
RFNQPVVSEQ QQQQQQQQQA AWKQKFLGSQ SMPFGGSVSL NSPTGKDGSV ENKIGRDVQN  660
QSLFSPQVDS SSLLYNMVPN LTSNVADNNV STIPSGSTYL QNAMYGCLDD SSGLLQNTGE  720
NDPTARTFVK VYKSGSVGRS LDITRFSNYA ELREELGQMF GIRGQLDDPD RSGWQLVFVD  780
RENDALLLGD DPWELPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1284036847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348616.10.0uncharacterized protein LOC100382863
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLK3Z3V50.0K3Z3V5_SETIT; Auxin response factor
STRINGSb06g032500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]