PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 17867.5 Da PI: 11.385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.7e-11 | 48 | 91 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW++e+r + kr+r ++g+f t+++Aa a++aa +l+g 462963302 48 RPRLGRWASELRLKC---KRQRLWIGTFATPQQAALAYDAAIYCLYG 91 7899*********43...46***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.369 | 40 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-9 | 43 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-11 | 48 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-16 | 48 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-7 | 48 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.32E-12 | 52 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAGRSTGAGA RRGGNPRSGN RKSSSRSAAP AAAPAGPGPK NQGWMGARPR LGRWASELRL 60 KCKRQRLWIG TFATPQQAAL AYDAAIYCLY GTEIPKTRRF NFPYMPFPNV SEQARAAGIP 120 VANIRAIAER HARSFAVYVE PPPPPVLPPE EIDAMNHMMA DISVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 65 | KCKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963302 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Fb01907.1.p | 1e-28 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 4e-15 | ERF family protein |