PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 338aa MW: 37735.7 Da PI: 8.9673 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.1 | 5.2e-10 | 50 | 89 | 5 | 44 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ 462963206 50 KTLRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89 7889************************855444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-7 | 46 | 109 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.393 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.0E-7 | 50 | 93 | No hit | No description |
Pfam | PF00170 | 5.6E-7 | 50 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.8E-8 | 51 | 95 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.6E-34 | 132 | 207 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MADASSRTDT STVLDDNDKN QRMEHGQSEA AMPSNSSDRS DRSDKPLDQK TLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDI 120 EYARWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKVKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LTNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQASIL ADNLRQQTLH 300 QMQRILTIRQ ASRALLAIHD YFSRLRALSS LWLARPRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061586 | 0.0 | BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333859.1 | 0.0 | uncharacterized protein LOC100279481 | ||||
Refseq | XP_008651318.1 | 0.0 | uncharacterized protein LOC100279481 isoform X2 | ||||
Refseq | XP_008651320.1 | 0.0 | uncharacterized protein LOC100279481 isoform X2 | ||||
Refseq | XP_020396043.1 | 0.0 | uncharacterized protein LOC100279481 isoform X2 | ||||
Refseq | XP_020396044.1 | 0.0 | uncharacterized protein LOC100279481 isoform X2 | ||||
Swissprot | Q7X993 | 0.0 | TGA21_ORYSJ; Transcription factor TGA2.1 | ||||
TrEMBL | A0A3L6E4R9 | 0.0 | A0A3L6E4R9_MAIZE; Transcription factor TGA2.1 | ||||
TrEMBL | C0HGY0 | 0.0 | C0HGY0_MAIZE; Transcription factor TGA6 | ||||
TrEMBL | K4JBS2 | 0.0 | K4JBS2_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G361847_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-144 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
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