PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462963191

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 544aa MW: 57860.8 Da PI: 8.9215

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462963191	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	232	292	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss 462963191 232 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 292 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-28	229	284	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	234	290	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	236	290	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	238	274	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MAPCVQWTHL TGTHAFPGKQ EATASGSGRR NLGSVRAPGV GTPRGQLPAD LANVGPAPVN 60 SWLRIARRAL TRTRPAAPVA AHRVHPKTGP LCKSRNSAGV WLHENARPNG QIFFPFLAAP 120 TPLVGSCRYG MELAGAASAQ PPESHVEPPR PPPQPPEKDS SKGTRDMMTT EEEPSTDQET 180 ELGQTNSSSL NSSSECENLT PSNDEMTGSE SNSEAAKTAG AGLSREKVLK KPDKILPCPR 240 CNSMDTKFCY YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSSNCRSILI 300 PGSSLAPPVG EASLYPLSID GNQAAVKFGP DSPLCNSMVS VLKIGEQSKN ANPASTAQPR 360 NGETQTCTPS TAASDSPQSE PLKGAARGPQ NGIVGQCNGI TSMHPIPCFP GPPFVYPWSP 420 AWNGIPAMAA PVCPAPAEAA NSSEHSNTNG GSPVLGKHSR DSRSQGDEKA ERCLWIPKTL 480 RIDDPNEAAK SSIWTTLGIE PGERGMFRPF QSKPESREQI SGATRVLQAN PAAMSRSQSF 540 QENT

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MAPCVQWTHL TGTHAFPGKQ EATASGSGRR NLGSVRAPGV GTPRGQLPAD LANVGPAPVN  60
SWLRIARRAL TRTRPAAPVA AHRVHPKTGP LCKSRNSAGV WLHENARPNG QIFFPFLAAP  120
TPLVGSCRYG MELAGAASAQ PPESHVEPPR PPPQPPEKDS SKGTRDMMTT EEEPSTDQET  180
ELGQTNSSSL NSSSECENLT PSNDEMTGSE SNSEAAKTAG AGLSREKVLK KPDKILPCPR  240
CNSMDTKFCY YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSSNCRSILI  300
PGSSLAPPVG EASLYPLSID GNQAAVKFGP DSPLCNSMVS VLKIGEQSKN ANPASTAQPR  360
NGETQTCTPS TAASDSPQSE PLKGAARGPQ NGIVGQCNGI TSMHPIPCFP GPPFVYPWSP  420
AWNGIPAMAA PVCPAPAEAA NSSEHSNTNG GSPVLGKHSR DSRSQGDEKA ERCLWIPKTL  480
RIDDPNEAAK SSIWTTLGIE PGERGMFRPF QSKPESREQI SGATRVLQAN PAAMSRSQSF  540
QENT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462963191

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647890.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0EGB4	0.0	A0A0E0EGB4_9ORYZ; Uncharacterized protein
STRING	OMERI07G23800.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-70	cycling DOF factor 2