PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462962580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26509.8 Da PI: 8.683 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.4 | 7.2e-10 | 73 | 120 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq 462962580 73 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 120 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-17 | 67 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.81E-11 | 67 | 124 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-17 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.523 | 69 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-7 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MPVRLKKKIP NRVQSPEAER RSKKSKLSAD AGAEDDDELS PAGGNGKGKE LVVAEAPKDY 60 IHVRARRGQA TDSHSLAERV RREKISERMK LLQDIVPGCS KVTGKAVMLD EIINYVQSLQ 120 RQVEFLSMKL STVNPRLEVD VVSLVQKDAN QPCVPAASTL APPPPPVYSL EGSSSAFRYA 180 SSPATAVQSA VTNDKSFDTR SSFVNHGIQD HSLEGFQNAN PQIGSLWEDD LQSLVQTGFR 240 GNT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462962580 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037022 | 6e-93 | BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds. | |||
GenBank | BT063660 | 6e-93 | BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds. | |||
GenBank | KJ726866 | 6e-93 | KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703449.1 | 1e-107 | transcription factor bHLH62 | ||||
TrEMBL | A0A109NDS5 | 1e-106 | A0A109NDS5_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ha00788.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-54 | bHLH family protein |