PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462962369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27157.9 Da PI: 8.2541 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68 | 2.6e-21 | 26 | 163 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkk.........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyW 83 F P deel+ e+L+ v +k+ l + i+ di++++P++Lp v+ + + +fF+++ k ++tg+rk+r+ + + 462962369 26 FVPPDEELI-EHLESMVLEKQgggsrvhplL---NhfipSIEGDnDICYTHPENLP--VTRDGQIKHFFHRTFKIHSTGTRKRRKimsesghhsS-EDVG 118 99*******.99****999998998886552...232223665569**********..54566777******************64433333321.1222 PP NAM 84 k.atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k +g ++v++ +g+++g +k++++ ++++ k+e t+Wvmh+y+l 462962369 119 KaISGIRRPVIV-RGRQKGWRKIMMLLNQKRGKTETTNWVMHQYQL 163 213455666666.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.137 | 20 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-8 | 26 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-20 | 26 | 181 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLDLYVHSCN NPCVETSKQK KDNKMFVPPD EELIEHLESM VLEKQGGGSR VHPLLNHFIP 60 SIEGDNDICY THPENLPVTR DGQIKHFFHR TFKIHSTGTR KRRKIMSESG HHSSEDVGKA 120 ISGIRRPVIV RGRQKGWRKI MMLLNQKRGK TETTNWVMHQ YQLCMSKDKD GELLVSKVFY 180 RCPDVTMIEQ NMRSVGDLVS SDQGQVQGNN QHIPSQDHVQ SLDSEPDTTL SLGLSTGGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462962369 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447408.2 | 1e-73 | NAC domain-containing protein 73 | ||||
Swissprot | Q9M0F8 | 4e-45 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1Z5RBA8 | 2e-71 | A0A1Z5RBA8_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Sb06g000536.1 | 4e-65 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37749 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 2e-47 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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