PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462962273 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 342aa MW: 36737.6 Da PI: 9.5301 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.7 | 1.2e-12 | 48 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g 462962273 48 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 104 78*******************433.44555535555.77******************98 PP | |||||||
2 | AP2 | 48.7 | 1.9e-15 | 149 | 198 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g 462962273 149 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 198 9***************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-10 | 48 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-14 | 48 | 113 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.73E-16 | 48 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-13 | 49 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-22 | 49 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-18 | 147 | 207 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.23E-22 | 147 | 208 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 148 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 148 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 148 | 206 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-10 | 149 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 188 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGTASLSSCV TTAGAGDYGG ALAAAAMDGG RKRSGAAGQQ KVHRHRTSQY RGVTRHRWTG 60 RYEAHLWDNS CRKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLEDYQEEL 120 EEMKNMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG NKDLYLGTFS 180 TQEEAAEAYD IAAIKFRGLN AVTNFDITRY DVDKIMASNT LLPGDLARRK KDDDVAAVSN 240 ANANAVTDAA PAALAPVAET WKIAAARAGG GEHQIGNQHH DVLSGEAFSS VLHDLQVATS 300 GAGGGAAQHM PMSSAASSLV TSLSNSREGS PDRGGGLATT SP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462962273 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088263 | 0.0 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155443.1 | 1e-159 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 1e-153 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3B6C593 | 1e-162 | A0A3B6C593_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M9B6 | 1e-162 | A0A446M9B6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446M9E3 | 1e-163 | A0A446M9E3_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_569371098.2 | 1e-163 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-114 | AP2 family protein |
Publications ? help Back to Top | |||
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