PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961738
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 331aa    MW: 35725.7 Da    PI: 9.6104
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961738genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-171171561756
                HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  462961738 117 RVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 156
                79***********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-8109162IPR001356Homeobox domain
PROSITE profilePS5007113.896115158IPR001356Homeobox domain
SuperFamilySSF466891.24E-13117156IPR009057Homeodomain-like
CDDcd000861.44E-13117156No hitNo description
Gene3DG3DSA:1.10.10.602.9E-15117157IPR009057Homeodomain-like
PfamPF000462.2E-14117156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSFGGMFDGA GSGVFSYDAG AGMLNPGRLM PSPPIPKRPG RLRALTCYLQ TNMDGGGQLG  60
DVSRLGLMGS GGSGSVGDGD SPVRRRARPG QQQPAQEEEA LPPPHPAANP GTRGVSRVFK  120
ECPHPDEKQR MELSKRLNLE SRQVKFWFQN RRTQMKVLRT ELHRSVNPST TCAGRTTQIE  180
RHENALLRQE NDKLRADNMT IREAMRSPMC ANCGGAAVLG EVSLEEQHLR IENARLKDEL  240
DRVCALARKF LGRPTSSGSP ALSLPGLESS AYVLTRYSPS SATTAQLISR RVSCPCDAMA  300
VLASPDLMTA ITPHGAAACG ARPQCASYVR I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657946e-94AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462701.12e-92homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V72e-83ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLC5X6405e-91C5X640_SORBI; Uncharacterized protein
STRINGSb02g030470.18e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5111922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.14e-62homeodomain GLABROUS 1