PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961505
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 282aa    MW: 31308.9 Da    PI: 4.9775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961505genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.65.7e-2866145181
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                lppGfrFhPtdeelv +yL+++++g++ ++  +i+e+d+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ +g
  462961505  66 LPPGFRFHPTDEELVAHYLCARAAGRRPPV-PIIAELDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTG 145
                79*************************999.88***************87778999********************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF140094.7E-10246IPR025322Protein of unknown function DUF4228, plant
SuperFamilySSF1019414.32E-3562170IPR003441NAC domain
PROSITE profilePS5100527.37466212IPR003441NAC domain
PfamPF023652.7E-1267145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLPCGALDVV NVVHLSGHVD EFAVPLTAAD VLAAHPNHAL TAAGRHTTPT TTAAARRRDA  60
EAELNLPPGF RFHPTDEELV AHYLCARAAG RRPPVPIIAE LDLYRFDPWD LPERALFGRR  120
EWYFFTPRDR KYPNGSRPNR AAGTGKKAGG GNNGGSLRLD DWVLCRLYHK KNEWEKMQQQ  180
KEEKEMETDL SHSHSFGDTR TPESEIDDVD HIPELASPPA VLPKEEAHEF DNLGLGADDW  240
LTGINLDDLQ GLCPMPGDDF YNSMLVTPKA EQGGADGFGF FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-59561765174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961505
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8098861e-108KR809886.1 Sorghum bicolor transcription factor 000584 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459566.11e-103NAC domain-containing protein 67
SwissprotQ75HE52e-80NAC2_ORYSJ; NAC domain-containing protein 2
SwissprotQ7EZT12e-80NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0A9D6V81e-114A0A0A9D6V8_ARUDO; Uncharacterized protein
STRINGSb02g006680.11e-103(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.16e-38NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]
  4. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  5. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]