PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462961268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19872.7 Da PI: 10.3187 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9.1e-52 | 15 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrF Ptdee+++ yL +k + ++ +++ ev+++++ePwdLp+k++ +ekewyfF+++ ky+tg+r+nratk+gyWkatg+d+e+++ 462961268 15 LPPGFRFYPTDEEVITSYLLQKFLNPSFAP-RAMGEVNLNTCEPWDLPSKARMGEKEWYFFCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKPasasa 113 79*************************888.88***************999999****************************************988888 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++elvg+kktLvfy grap+g+kt+Wvmheyrle 462961268 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149 777777****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-55 | 12 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.744 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 16 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVERGVKSEQ GDLFLPPGFR FYPTDEEVIT SYLLQKFLNP SFAPRAMGEV NLNTCEPWDL 60 PSKARMGEKE WYFFCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKPAS ASAGGGRELV 120 GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKVQNRN KY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 13 | 160 | 18 | 157 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462961268 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 2e-98 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 7e-81 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A2T7CJI0 | 2e-98 | A0A2T7CJI0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PH65 | 2e-98 | A0A3L6PH65_PANMI; NAC domain-containing protein 77-like | ||||
STRING | Pavir.J21394.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-69 | Arabidopsis NAC domain containing protein 87 |