PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462961265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33645.4 Da PI: 8.2793 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.5 | 2.3e-31 | 5 | 80 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e++g+kk Lvfy+g+ pkg+ktdWvmheyrl 462961265 5 GENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSENIGVKKALVFYRGKPPKGVKTDWVMHEYRL 80 578*************************************9989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.886 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-39 | 3 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-15 | 8 | 80 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
KALFGENEWY FFSPRDRKYP NGARPNRAAG SGYWKATGTD KAILSTPTSE NIGVKKALVF 60 YRGKPPKGVK TDWVMHEYRL TVGNKTTKRK GSSSMRLDDW VLCRIYKKSN NFQFSDQEQE 120 GSTVEEDSSL NNNMNGVASP KSEAAHASDD DQFRPLSMTK SCSLTDFFKN IDYSTLSELL 180 LDVPAGPEPQ QSPLIYTTPA SHSHNDMNNS INMPQVDALY SDYGANYNGL KRKRIMTVDG 240 VSSFDDGSSF TKKMQLPNDS RSGCNQQLAE ASSSFQYSSL LSYPCLNQQR LLLNNHLEMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-49 | 1 | 113 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-49 | 1 | 113 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-49 | 1 | 113 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-49 | 1 | 113 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-49 | 1 | 113 | 68 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-49 | 1 | 113 | 65 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-49 | 1 | 113 | 65 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462961265 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828039.1 | 1e-132 | NAC transcription factor 29-like | ||||
TrEMBL | A0A2S3IC67 | 1e-131 | A0A2S3IC67_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16651.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 9e-57 | NAC-like, activated by AP3/PI |