PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961192
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 464aa    MW: 50084.8 Da    PI: 8.6564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961192genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32203259259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  462961192 203 DDGYNWRKYGQKVVKGSECPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 259
                8**************************************99.***************8 PP
2WRKY108.14.2e-34359417159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  462961192 359 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 417
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-29199261IPR003657WRKY domain
SuperFamilySSF1182901.44E-25201261IPR003657WRKY domain
SMARTSM007742.7E-35202260IPR003657WRKY domain
PfamPF031068.9E-25203259IPR003657WRKY domain
PROSITE profilePS5081123.307203261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-37345419IPR003657WRKY domain
SuperFamilySSF1182902.62E-29351419IPR003657WRKY domain
PROSITE profilePS5081137.413354419IPR003657WRKY domain
SMARTSM007747.0E-40359418IPR003657WRKY domain
PfamPF031063.7E-26360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSARPPPPPR PHLALPPRSN SESLFTGAXG GGNTSSSGAG APSFTQLLTG PYAPQQHHEA  60
ERGRGGVARA GPALSVAPPA SSASGASVFT VPPGLSPSGL LDSPGLLFSP AMGGFGMSHQ  120
QALAQVTAQA THSPLRMFDN MEQPSFSTAA TSSEAQQHMN SAANMARVSE MRMVTSNNDN  180
ASFQSAEASQ RYQVNAPVDK PADDGYNWRK YGQKVVKGSE CPRSYYKCTH PNCPVKKKVE  240
HAEDGQISEI IYKGKHNHQR PPNKRSKDGN SSAAEQIEQS NDTASGLSGA KRDQEAIYGA  300
SEQVSGLSDG DDMDDGESRS HEVDDGDSEN KRRNIQISSQ RTLSEPKIIV QTTSEVDLLD  360
DGYRWRKYGQ KVVKGNPHPR SYYKCTFAGC NVRKHIERAS SDPKAVITTY EGKHNHEPPV  420
GRGSNQNAGM SQQKGQNNQA SLSRTDFSNA NQRQMGILQF KREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-39193419877Probable WRKY transcription factor 4
2lex_A4e-39193419877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-93WRKY DNA-binding protein 3