PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960851
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 335aa    MW: 37824.1 Da    PI: 11.8048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960851genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-121377148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.................kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv     +G  +W+++++  g                 + R++k+c++rw +yl
        462960851 13 KGPWTAEEDQKLVTFLLSHGHCCWRLVPKLAGsislpehaapmspnssgLLRCGKSCRLRWTNYL 77
                     79*************************************************************97 PP
2Myb_DNA-binding55.21.6e-1786127447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
        462960851  86 LSEEEEALVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 127
                      599****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-19479IPR009057Homeodomain-like
PROSITE profilePS512949.75877IPR017930Myb domain
SuperFamilySSF466894.31E-2410124IPR009057Homeodomain-like
SMARTSM007178.1E-111279IPR001005SANT/Myb domain
PfamPF002491.5E-111377IPR001005SANT/Myb domain
CDDcd001677.03E-81577No hitNo description
PROSITE profilePS5129428.28478132IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2580132IPR009057Homeodomain-like
SMARTSM007175.0E-1682130IPR001005SANT/Myb domain
PfamPF002492.2E-1586127IPR001005SANT/Myb domain
CDDcd001674.43E-1387128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
GRQPCCEKVG LKKGPWTAEE DQKLVTFLLS HGHCCWRLVP KLAGSISLPE HAAPMSPNSS  60
GLLRCGKSCR LRWTNYLRPD LKRGLLSEEE EALVIDLHAQ LGNRWSKIAA RLPGRTDNEI  120
KNHWNTHIKK KLRKMGIDPA THRPLQHPAQ SAEPLTQQDP PPKAREERRG DEPKASSQGP  180
AGAADEDNDD ELVPAARRRL PCLHGSHGVA VLLLVRLGLR RDPRRRRGRM ARPHRPLRGG  240
WHHGHGLGGH LVRLRRRRHR PKRRPVRPLS RRRLRSTSLD VMMLIVTAAA LLGRIRTLSF  300
LCSSISRSLS LSLWFLALGQ FKFVHVLMGC IMHGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27111325108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252259RLRRRRHR
2255272RRRHRPKRRPVRPLSRRR
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960851
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-104EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149774.11e-93odorant 1 protein
SwissprotQ50EX67e-76ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3L6F8W02e-92A0A3L6F8W0_MAIZE; Protein ODORANT1
TrEMBLA0A3L6RR412e-92A0A3L6RR41_PANMI; Protein ODORANT1-like
TrEMBLB6TI052e-92B6TI05_MAIZE; Odorant 1 protein
STRINGGRMZM2G055158_P013e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-77myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]