PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 362aa    MW: 41946 Da    PI: 7.3656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960561genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       +++e++e+yfFs++dkky+tg+r+nrat++g+Wkatg+dk++++
  462960561  15 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPAEEEQNEYYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIYA 113
                69****************************.99**************95466665444577799***********************************9 PP

        NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                + +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  462960561 114 NkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 149
                856777****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-584181IPR003441NAC domain
PROSITE profilePS5100557.65815181IPR003441NAC domain
PfamPF023651.3E-2716148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGMSSTHAQA QQQLVPPGFR FHPTDEELVD YYLRKKVASR RIDLNVIKDV DLYKIEPWDL  60
QEKCRLGGPA EEEQNEYYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP IYANKQRQLV  120
GMRKTLVYYK GRAPNGHKSD WIMHEYRLET NENGPPQASR YILLDLIHQL ARWVVCRVFK  180
KRLPTTRRES DHDASCWYVD DDGSFMHDLN SPMSGMPTHH SMELQEQHLQ MLNNTYKREL  240
KLQFQMPTHH AFSTVPQDLE SPSFHSLLVS PDYQTNVHHA HQHVQLIENA VDQVTDWRVL  300
DKFVASQLSH DATKSADYTE EGDILQVSEK QEVGNDYAST STSSSQVDPW KTSVVRKNKG  360
NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5011821169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-105NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0K1TPD70.0A0A0K1TPD7_PANVG; Secondary wall NAC master switch
STRINGPavir.Da02426.1.p0.0(Panicum virgatum)
STRINGSi006829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.13e-97NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]