PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462960145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 270aa MW: 30079.3 Da PI: 7.4038 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 1.9e-12 | 40 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g 462960145 40 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDIEEKAARAYDLAALKYWG 96 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 49.6 | 9.5e-16 | 139 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g 462960145 139 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 190 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.51E-14 | 40 | 105 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-10 | 40 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.96E-16 | 40 | 103 | No hit | No description |
SMART | SM00380 | 1.7E-20 | 41 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-12 | 41 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.884 | 41 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-7 | 42 | 53 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-18 | 139 | 199 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-11 | 139 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.36E-24 | 139 | 200 | No hit | No description |
SMART | SM00380 | 3.9E-34 | 140 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-19 | 140 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 140 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-7 | 180 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSSSGSQAAA SCVTMQMAAA DPVEGSVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD 60 NSCRKEGQTR KGRQGGYDIE EKAARAYDLA ALKYWGPSTN INFTLEDYRE ELEEMKNMTR 120 QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FSTQEEAAEA 180 YDVAAIKFRG LNAVTNFDIT RYDVDKIMES STLLPAELAA AALPAPPTRT DEHGGQNHEQ 240 LLSSEAFSLL HDMVSVDAAA GDNAQHMSNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462960145 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 1e-174 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981612.1 | 1e-141 | AP2-like ethylene-responsive transcription factor ANT isoform X4 | ||||
Swissprot | Q84Z02 | 1e-136 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A1E5VRG8 | 1e-144 | A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | GRMZM2G028151_P01 | 1e-140 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-122 | AP2 family protein |
Publications ? help Back to Top | |||
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