PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959784
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 232aa    MW: 24388.3 Da    PI: 10.2841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959784genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1877122655
        AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                Vr+++ +grW+AeIrdp     + +r++lg+f t+eeAa+a++aa+++l+g
  462959784  77 VRRRP-WGRWAAEIRDPA----KaARVWLGTFATPEEAARAYDAAARRLKG 122
                99999.**********83....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.99773130IPR001471AP2/ERF domain
PRINTSPR003672.5E-77485IPR001471AP2/ERF domain
CDDcd000184.24E-1577129No hitNo description
SuperFamilySSF541719.81E-2077131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-2877130IPR001471AP2/ERF domain
PfamPF008472.9E-1277122IPR001471AP2/ERF domain
SMARTSM003805.4E-2977136IPR001471AP2/ERF domain
PRINTSPR003672.5E-796112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGKRSAPLS GEEPEVEKKL RRGDGFPGHR YFSAARAEYD VAVVAAALTH VVCATEPSAA  60
ALPAARQLAA ALVVVDVRRR PWGRWAAEIR DPAKAARVWL GTFATPEEAA RAYDAAARRL  120
KGAKAKLNFP TPLSTSSSSP ADQGTVSSSS SSLAHASVLA APAAADFFPD LRSYTRILQS  180
RSDVVLSGAG AMTTLARWSP DEKLQRPDPE YDDGRDRGGS SSSAGGGVAR RA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1877135968ATERF1
3gcc_A3e-1877135968ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959784
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278396e-59KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652886.11e-44ethylene-responsive transcription factor 11
TrEMBLA0A060D1Y72e-43A0A060D1Y7_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G131281_P014e-44(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-11ERF family protein