PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462959694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HB-other | ||||||||
Protein Properties | Length: 330aa MW: 36569.8 Da PI: 4.5693 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.6e-10 | 258 | 309 | 3 | 54 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 R +++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR + 462959694 258 ARKRLKKVQLETLERVYLRSKRPTDTMISSIVQVTNLPRKTIVKWFEDRREQ 309 58999*********************************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.479 | 253 | 313 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-5 | 255 | 317 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.10E-9 | 256 | 307 | No hit | No description |
SuperFamily | SSF46689 | 3.21E-10 | 256 | 311 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 258 | 309 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-7 | 258 | 308 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MATVLPLAMP AASAAPTACI SGSPSPASFT GTRAHLSLRF RGSPRGVACA LRRRPTKYKT 60 KIQNDDVATE DDMDDEDEDA ALEAIFKQLE EDLENDDLSV NDEDEISEED MARFEQELAE 120 AIGDVGGAEE SAGDLSSGFG DSGNDDKEAG SEQSELKNWQ LRRLARALKI GRRKTSIKNL 180 ASELGLDRAL VIELLRNPPP KLLFMSDSLP DETPSKPEVK EVEPLSSTIV DEAESSHATE 240 INQEMELPIH VRSAEWSARK RLKKVQLETL ERVYLRSKRP TDTMISSIVQ VTNLPRKTIV 300 KWFEDRREQE GVPDHHAAFR RSLSETVASS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 265 | ARKRLKKVQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462959694 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659724.1 | 1e-157 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
TrEMBL | A0A0A9IZX9 | 1e-160 | A0A0A9IZX9_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G163641_P01 | 1e-157 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10700 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11270.1 | 7e-58 | overexpressor of cationic peroxidase 3 |