PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462959535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18677.4 Da PI: 10.3045 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.7 | 1.1e-09 | 72 | 95 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t 462959535 72 CNGCPTILVYNRGATNIRCPNCRT 95 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.6E-9 | 70 | 97 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.8E-9 | 72 | 95 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-4 | 108 | 138 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-6 | 111 | 135 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
HRGATHLSRS LSLLSSISAV FRAEPSINPF SLRLGAETAV FGVSRRGMQD QLYCNTFTSV 60 NPSAGKMSEL VCNGCPTILV YNRGATNIRC PNCRTLNSTR SGANQMGQLQ CGRCPTTLAY 120 QLGASTVGCP RCRHVNHVRD ARPQTVLVEN PKTLDDKGKL VSNVAVGVAS WKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462959535 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320000.1 | 3e-59 | protein LOL4 isoform X3 | ||||
Refseq | XP_021320001.1 | 3e-59 | protein LOL4 isoform X3 | ||||
Swissprot | Q84UR0 | 8e-58 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A0E0LQX3 | 1e-56 | A0A0E0LQX3_ORYPU; Uncharacterized protein | ||||
TrEMBL | C5YMW9 | 9e-57 | C5YMW9_SORBI; Uncharacterized protein | ||||
STRING | OPUNC08G01880.1 | 2e-57 | (Oryza punctata) | ||||
STRING | Sb07g002500.1 | 1e-57 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-22 | LSD family protein |
Publications ? help Back to Top | |||
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