PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959451
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 270aa    MW: 30110.4 Da    PI: 10.2947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959451genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++  G+g +W + ++++g++R++k+c++rw++yl
        462959451 14 KGPWSPEEDAKLKSYIEHNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding31.73.6e-1070148346
                      SS-HHHHHHHHHHHHHTTTT....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....................................tWktIartmgkgRtlkqcksrwqk 46 
                       +++eEd +++ +    G++                                    +W+ Ia+ ++ gRt++++k++w++
        462959451  70 GFSEEEDRIILSLYISIGSRykfsrshrpstsfdqtncriscnmlgshmdhaccgrRWSIIAAQLP-GRTDNDIKNYWNT 148
                      689999999999999999999999999999999999999999999999******************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.065966IPR017930Myb domain
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
SuperFamilySSF466893.05E-221466IPR009057Homeodomain-like
PfamPF002498.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241569IPR009057Homeodomain-like
CDDcd001671.31E-81662No hitNo description
PROSITE profilePS500908.31663150IPR017877Myb-like domain
SMARTSM007176.5E-967152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-217086IPR009057Homeodomain-like
SuperFamilySSF466893.05E-22122151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-21124154IPR009057Homeodomain-like
PfamPF002498.9E-7124148IPR001005SANT/Myb domain
CDDcd001675.88E-6125150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE HNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIL SLYISIGSRY KFSRSHRPST SFDQTNCRIS CNMLGSHMDH  120
ACCGRRWSII AAQLPGRTDN DIKNYWNTRL KKKLFGKQSR KDQRQQQQFM RQATASDGVK  180
QEASGDANGS SAMAAAAYNW HQQAMALPVQ PMPGTMMEGH RPGDEVDESI RKLLYKLGGS  240
PFAALQQCVP PTMQSKLRAA IVPGGQRPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-161415458159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-161415458159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959451
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120186e-81AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463820.11e-125myb-related protein Hv1
SwissprotQ9FKL25e-73MYB36_ARATH; Transcription factor MYB36
TrEMBLC5WZ771e-124C5WZ77_SORBI; Uncharacterized protein
STRINGSb01g006800.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-73myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]