PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462959144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 27710.9 Da PI: 10.318 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.6 | 3.7e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++q+G g+W++ ++ g++R++k+c++rw +yl 462959144 15 KGPWTPEEDKLLVDYINQHGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4.1e-19 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l 462959144 68 RGRFTEEEEKLIIQLHSALGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.546 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.388 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-14 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-28 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRSPCCEQD AGVKKGPWTP EEDKLLVDYI NQHGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTEEEEKLII QLHSALGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLNM 120 GIDPVTHRPR NDLLPNLLNL PPWVGNDTQI NALKLQADAA KFQLLQGLLR ALTTAPSPGV 180 DLMQALLAGG GLATVVPPAV DQVTSSRLQY DGLLNLPALT TLPAVSQAGM MPSFTGRRAQ 240 LIGHHGSAAR D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-30 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462959144 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811879.1 | 1e-119 | transcription factor MYB93-like | ||||
Swissprot | Q9S9Z2 | 5e-79 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1E5W851 | 1e-119 | A0A1E5W851_9POAL; Transcription factor MYB39 | ||||
STRING | Pavir.J23197.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-80 | myb domain protein 9 |
Publications ? help Back to Top | |||
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