PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462959036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 27302.1 Da PI: 8.2327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.4 | 1.9e-06 | 171 | 211 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L 462959036 171 ARLRRERVSERLRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 211 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.443 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.55E-11 | 168 | 216 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-14 | 168 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-12 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-10 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDASFGWAGA GQHVDDYFSR QAAGCARFEA DDAFLGACFG QQPCDGVVGG DVDGTCQVSS 60 NFGGCAAGAD DGDPLAAFLS SRTTSGDVVF DGSLLDAALA FSRELGGDGG GPVSNGGAMF 120 SSYDSGTRRQ PRRRRGGVAD VVHRVAHHHH RAAVPPRVVP GPGPAAGTVA ARLRRERVSE 180 RLRVLQRLVP GGSKMDTASM LDEAASYLKF LKSQVQELET LGTTSSSRSQ HYSYQSSSSS 240 NPRFLGFARS SNIPHAGYKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 134 | RRQPRRRR |
2 | 171 | 176 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462959036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100208 | 5e-60 | AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence. | |||
GenBank | AK106119 | 5e-60 | AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence. | |||
GenBank | AP003273 | 5e-60 | AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09. | |||
GenBank | AP003381 | 5e-60 | AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11. | |||
GenBank | AP014957 | 5e-60 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 5e-60 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT831219 | 5e-60 | CT831219.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223P22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311298.1 | 6e-35 | transcription factor bHLH84 | ||||
Refseq | XP_021311299.1 | 6e-35 | transcription factor bHLH84 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-10 | bHLH family protein |