PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 276aa MW: 31082.3 Da PI: 8.6645 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9e-52 | 11 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d+elv +yL+kk++g + + ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg+r+nrat+sgyWkatgkd+++ 462958836 11 LPPGFRFHPRDDELVLDYLAKKLHGGGgsmV---SiygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATESGYWKATGKDRPI 107 79***********************996552...334454699*************6555689************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ 462958836 108 SQ-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 142 99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-60 | 4 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-26 | 12 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MNSPSMVEAR LPPGFRFHPR DDELVLDYLA KKLHGGGGSM VSIYGCPTMV DVDLNKCEPW 60 DLPDIACIGG KEWYFYSLRD RKYATGQRTN RATESGYWKA TGKDRPISQK GLLVGMRKTL 120 VFYQGRAPKG KKTEWVMHEF RMEGQGDPTK LHFKEDWVLC RVFYKSRATI AKPPTESSSY 180 NIDTTTTSLP PLIDNYNISF DQPSSVQNLE GYEQVPCFSN NPSQPSSSMN APLSSAMAAD 240 QEQHMGKSVK DVLMSQFSRF EGNVKRETPQ RGLGLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 7 | 166 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958836 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-86 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1E5VPB2 | 1e-180 | A0A1E5VPB2_9POAL; NAC domain-containing protein 21/22 | ||||
TrEMBL | K3XYG7 | 1e-180 | K3XYG7_SETIT; Uncharacterized protein | ||||
STRING | Si006975m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-87 | NAC domain containing protein 1 |