PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 914aa MW: 100991 Da PI: 6.3494 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 6.8e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ 462958810 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLL 229 99*****************************86555544..8************************************************..7777778* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 462958810 230 LGIRRA 235 **9997 PP | |||||||
2 | Auxin_resp | 121.7 | 5.3e-40 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k 462958810 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-48 | 119 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-42 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.80E-21 | 133 | 234 | No hit | No description |
SMART | SM01019 | 4.1E-24 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 134 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-35 | 260 | 343 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.92E-7 | 777 | 859 | No hit | No description |
Pfam | PF02309 | 2.6E-8 | 780 | 868 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.164 | 783 | 867 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MRLSSSSGSV LPAQAASPEA VAEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV 60 AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP 120 AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH 180 GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLVWLRDST NPGFQSLNFG 420 GLGMSPWMQP RLDASLLGMQ SDLYQTMATA GFQDPTKQLS PTMLQFQQPQ NITGRAAPLL 480 SSQVLQQVQP QFQQQTYLQN ISESTIRGQS QTEFLKQQIQ RSQSFNEQKN QLQPQQQQQE 540 SQHQQQSSQC MQVPQHQQIQ QQNMANFQPV SNALSAFSQL SSASQSSPMA LQNILPFSQA 600 QSFADTNVSS LSPSNASTMQ NTLKPFSSEA ASHLSMPRPT AIPVPDPWSS KRVAVESLLP 660 SRPQVTSPME QLDSTPTSIS QSSALAPLPG RGCLVDQDGS TDPQNHLLFG VSIDSQSLLM 720 QGGIPNLQNG NDSTNIPYST SNFLSPSQND FPLDHTLNSS GCLDDPGYVP CSDNSDQVTR 780 PPATFVKVYK SGTYGRSLDI TRFSSYHELR RELGHLFGLE GQLEDPLRSG WQLVFVDREE 840 DVLLVGDDPW QEFVNSVSCI KILSPQEVQQ MGKGLELLSS APGRRLGSSC DDYVSRQESR 900 SLSTGIASVG SVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 27 | 364 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333731.1 | 0.0 | uncharacterized protein LOC100502480 | ||||
Refseq | XP_008644237.1 | 0.0 | uncharacterized protein LOC100502480 isoform X1 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A1D6GSS0 | 0.0 | A0A1D6GSS0_MAIZE; Auxin response factor | ||||
TrEMBL | A0A3L6ETW6 | 0.0 | A0A3L6ETW6_MAIZE; Auxin response factor | ||||
STRING | Pavir.Da00065.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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