PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | DBB | ||||||||
Protein Properties | Length: 213aa MW: 23304.5 Da PI: 8.3535 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 7.9e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ 462958552 4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 30.3 | 8.8e-10 | 118 | 159 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++ek+ lfC++++ lC+dC ++ H Ht 462958552 118 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTTseltmrHT 159 689*****************************6566777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.6E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.44E-4 | 3 | 35 | No hit | No description |
Pfam | PF00643 | 9.6E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.09 | 64 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.812 | 116 | 163 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.7E-13 | 116 | 163 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.9E-8 | 118 | 159 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.38E-7 | 119 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLSP SPSASSSGSA 60 AHQPSPPLCD ICQPALCDSC DRRVHRANKL AGKHRRFSLL SPSPSASSSG SAAHQPSPPL 120 CDICQEKRGL LFCKEDRAIL CRDCDVSVHT TSELTMRHTR FLLTVEQLYC ESAVTGDARI 180 HRERWVPQMS YAGMDMAGSK RPRTTSAASY SYW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958552 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822828.1 | 1e-51 | B-box zinc finger protein 20-like isoform X1 | ||||
TrEMBL | A0A1E5URW6 | 4e-55 | A0A1E5URW6_9POAL; B-box zinc finger protein 21 | ||||
STRING | Sb04g033440.1 | 5e-49 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 5e-26 | DBB family protein |