PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958534
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 266aa    MW: 27813.2 Da    PI: 4.5583
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958534genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.48.9e-144693148
   trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspk 48
               rW+k+ev+aLi++r+e++e+  ++ +k+plWe+++  mr+ g++rs++
  462958534 46 RWPKEEVQALIQLRTEKDEQEHDAGSKGPLWEDIATGMRRIGYNRSAV 93
               8*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-74593No hitNo description
CDDcd122034.94E-154692No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MPASPRHDVA ALAVVPAPAK PEDAWAWAGG GGEQLGSGSS TPSSSRWPKE EVQALIQLRT  60
EKDEQEHDAG SKGPLWEDIA TGMRRIGYNR SAVSKTCPYF HQLDAMYRKR RFAGSAGSGT  120
SSGALVVTTV TASGQVSPSQ RELEGKISND VGNQTIAGVA NVKVTPTTTA AGDGAKSQNA  180
EDTVRETNAQ LQQQQQQEFA ADETDSDDMD GNYADQGNDG DNMQYKTGFQ KPNVMGSSGN  240
APAPTETAAA ATSSAPTSSS TFLAVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.13e-82trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.13e-82trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0A9DG783e-90A0A0A9DG78_ARUDO; Uncharacterized protein
STRINGSi016578m1e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-21Trihelix family protein