PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 215aa MW: 23069.1 Da PI: 8.6452 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.8 | 1.7e-19 | 1 | 49 | 38 | 87 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a 462958492 1 MRRLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 49 899*****************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.3E-12 | 1 | 50 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MRRLGYNRSS KRCKEKWENI NKYFKKVKES NKRRPEDSKT CPYFHQLDAM YRKKRFAGST 60 GSGTSSGALV TAVTASGQAS PSQRELEGKI SNDVGNQNIA GVANVKMAPT TTAAADGTKS 120 QNAEDTVRET NAQLQQQQQQ QQQGFAGDET DSDDDMDGNY ADQGNDGDNM QYKTGFQKPN 180 VMGSSGNAPA PTETAAAATS SAASAPTSST FLAVQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958492 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054872 | 6e-65 | BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds. | |||
GenBank | BT067767 | 6e-65 | BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953287.1 | 3e-71 | trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_012699251.1 | 3e-71 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0A9DG78 | 3e-83 | A0A0A9DG78_ARUDO; Uncharacterized protein | ||||
STRING | Si016578m | 1e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-31 | Trihelix family protein |