PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958393
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 965aa    MW: 105557 Da    PI: 7.0995
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958393genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-1850107457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++t+eq+e+Le+++ ++++p+  +r+++ +++    +++ +q+kvWFqNrR +ek+
  462958393  50 YVRYTPEQVEALERVYSECPKPTSLRRQQIIRECpilsNIEPKQIKVWFQNRRCREKQ 107
                6789****************************************************97 PP
2START55.61.7e-18198294297
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++++++l vi +g  g+++l++++
  462958393 198 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRTSWYRDCRRVDVLHVIPTGngGTIELIYMQ 294
                68999*****************************************************.8888888888******************99999998875 PP
3START33.69e-12295346125173
                EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
      START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                i+++S++  +  p    s+++ RaellpSg+li+p+++g+s + +v+hvdl+
  462958393 295 ICERSLTKSTGGPCgpnSPNFTRAELLPSGYLIRPCEGGGSMIYIVDHVDLD 346
                89999999998887777*********************************97 PP
4START117.71.6e-3734749562204
                HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEE CS
      START  62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgilie 155
                v+e+l+d+  W ++++++++l vi +g  g+++l++++++a+++++  Rdf+++Ry+  l +g++vi+++S++  +  p    s+++ RaellpSg+li+
  462958393 347 VAEILKDRTSWYRDCRRVDVLHVIPTGngGTIELIYMQTYAPTTMAQpRDFWTLRYTSGLDDGSLVICERSLTKSTGGPCgpnSPNFTRAELLPSGYLIR 446
                789999999*********************************999877****************************9887788***************** PP

                EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
      START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                p+++g+s + +v+hvdl++ +++++lr+l++s  + ++k++va++++ +
  462958393 447 PCEGGGSMIYIVDHVDLDALSVPEVLRPLYESPKILAQKMTVAAMRHIR 495
                ********************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1838107IPR009057Homeodomain-like
PROSITE profilePS5007115.2444108IPR001356Homeobox domain
SMARTSM003895.0E-1546112IPR001356Homeobox domain
SuperFamilySSF466893.64E-1648110IPR009057Homeodomain-like
CDDcd000867.24E-1649109No hitNo description
PfamPF000461.0E-1550107IPR001356Homeobox domain
CDDcd146865.76E-6101140No hitNo description
PROSITE profilePS5084821.394188478IPR002913START domain
SMARTSM002344.3E-31197497IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-5197346IPR023393START-like domain
PfamPF018521.4E-15198294IPR002913START domain
SuperFamilySSF559611.51E-20198346No hitNo description
PfamPF018521.0E-8295346IPR002913START domain
PfamPF018521.5E-34347495IPR002913START domain
SuperFamilySSF559614.81E-25348498No hitNo description
Gene3DG3DSA:3.30.530.202.1E-18352469IPR023393START-like domain
PfamPF086708.9E-45822964IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MTRRASLVTA PPLRLPQARV TSAAMAAAVA SRERRLSPGA GAPQVDTGKY VRYTPEQVEA  60
LERVYSECPK PTSLRRQQII RECPILSNIE PKQIKVWFQN RRCREKQRKE SSRLQTVNRK  120
LSAMNKLLME ENDRLQKQVS RLVNDNGYMR NRLDKPSVAT TDTSCESVVT GGQQHMQHPV  180
VPQSLQRDAN NPAGLLAIAE ETLAEFMSKA TGTAVNWVQM VGMKPGPDSI GIIAVSHNCS  240
GVAARACGLV SLEPTKVAEI LKDRTSWYRD CRRVDVLHVI PTGNGGTIEL IYMQICERSL  300
TKSTGGPCGP NSPNFTRAEL LPSGYLIRPC EGGGSMIYIV DHVDLDVAEI LKDRTSWYRD  360
CRRVDVLHVI PTGNGGTIEL IYMQTYAPTT MAQPRDFWTL RYTSGLDDGS LVICERSLTK  420
STGGPCGPNS PNFTRAELLP SGYLIRPCEG GGSMIYIVDH VDLDALSVPE VLRPLYESPK  480
ILAQKMTVAA MRHIRQIAHE SSGEIPYIAG RQPALFRTFS QRLSRGFNDA VNGFPDDGWS  540
LLSSDGSEDI KISVNSSANK LVGFHVSSSP FVSAIGVGIM CAKASMLLQD VPPALLVRFL  600
KDHRSQWADP AVDAYSAATL RTNPYAVSGL RNGGFMGNQP ILLAETFDHE ESLEIVRSEG  660
QALSHDEALL SRDMLLLQLC NGVDENAPGA CAQLVFAPID ESFTDDAPLL PSGFRVIQLD  720
GKADAPSSTR TLDLASALDV GSVGELRASK DVPGARNVKS VLTIAFQFPF ENHLCDSVAA  780
MARQYVRSVL ATVQKVAMVL SSSRPGLQIE MKHPPGSPEA HTLARWIIKS YRAHIGVDIR  840
WSDTEDVESP LKLLWKHSDA ILCCSLKASP MLMFANSAGL DILETTLINI QDMPLETVLG  900
DEGQKALFLE LAKIMQQGFA YLPGGVCKSS MGRQASYEQA VAWKVVGDDG VPHCLALMLV  960
NWTFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958393
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434103.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
RefseqXP_016434104.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A1S3X3300.0A0A1S3X330_TOBAC; homeobox-leucine zipper protein ATHB-15-like isoform X1
STRINGSb08g021350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]