PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462958011

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ARF

Protein Properties

Length: 840aa MW: 92651.8 Da PI: 6.3975

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462958011	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.3	7.3e-24	148	249	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + +++el+v+ 462958011 148 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGENGELRVG 245 99***************************555555669********************************************..449999** PP EE-S CS B3 96 vfrk 99 v+r+ 462958011 246 VRRA 249 *985 PP
2	Auxin_resp	111.6	7.6e-37	274	356	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk 462958011 274 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKQNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 356 89*******************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-40	142	263	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.19E-41	145	277	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-21	146	248	No hit	No description
SMART	SM01019	7.7E-23	148	250	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-21	148	249	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.73	148	250	IPR003340	B3 DNA binding domain
Pfam	PF06507	8.6E-34	274	356	IPR010525	Auxin response factor
PROSITE profile	PS51745	22.545	713	797	IPR000270	PB1 domain
SuperFamily	SSF54277	3.78E-11	715	789	No hit	No description
Pfam	PF02309	7.0E-7	760	796	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MAGVAAAPAG AGDGGGGVGG GGVGAGKDAL FVELWKACAG PLSSVPPLGE KVYYFPQGHI 60 EQVEASTNHV AEQQGTPLYN LPWKIPCKLM NIELKAEQDT DEVYAQLTLL PDKKQEEIAS 120 TTEGNEEEEV AVPDAPPATN ERIHIHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS 180 QHPPNQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG 240 ELRVGVRRAL RHQTTVPSSV ISSHSMHLGV LATAWHAVNT GSMFTIYYKP RTSPAEFVVS 300 RDRYYESLKQ NYSIGMRFKM RFEGEEAAEQ RFTGTIVGIG ASDPSGWADS KWRSLKVRWD 360 EASSVPRPER VSPWQIEPAV SPPPVNPHSA VRIKRSRPNA NASSSDLPTV TNREAVPDSQ 420 QTFIPRALHS QGITPLTSRF GDSSDLKTAQ DLTMWSSGIN QDRNCIATQT KLSLEGWMQT 480 RRPEGYNQML SGFQPVKDAH NSFYFSCPIS GNRSNTWDTT NARYPVQQAN RNMLPGTCSL 540 MPDNNTVLGM NQHSYLTMPD TAFPHRTENG NFSRNGAFTS LQGRGLDQNL GWCGNIDSSS 600 SPTLIKPRPL VIDNDVQKTK GPSFKLFGIP LDSPAKPELL LSPPSVTYDG KLQISPSENR 660 NQLDLVELGN CPDPSKIVKP LDGPQPDPTM ENNQPCQEAI QNIQNKVQNC STRSCKKVHK 720 QGNALGRSVD LTKFTCYDEF VAELDQMFDF DGELSSPRKN WLVVYTDNDG DMMLVGDDPW 780 NEFCNIVHKI FIYTREEIER MNPGALNSKS EDSLPNSLGR GASKELQGGP STSSLDSENC

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MAGVAAAPAG AGDGGGGVGG GGVGAGKDAL FVELWKACAG PLSSVPPLGE KVYYFPQGHI  60
EQVEASTNHV AEQQGTPLYN LPWKIPCKLM NIELKAEQDT DEVYAQLTLL PDKKQEEIAS  120
TTEGNEEEEV AVPDAPPATN ERIHIHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS  180
QHPPNQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG  240
ELRVGVRRAL RHQTTVPSSV ISSHSMHLGV LATAWHAVNT GSMFTIYYKP RTSPAEFVVS  300
RDRYYESLKQ NYSIGMRFKM RFEGEEAAEQ RFTGTIVGIG ASDPSGWADS KWRSLKVRWD  360
EASSVPRPER VSPWQIEPAV SPPPVNPHSA VRIKRSRPNA NASSSDLPTV TNREAVPDSQ  420
QTFIPRALHS QGITPLTSRF GDSSDLKTAQ DLTMWSSGIN QDRNCIATQT KLSLEGWMQT  480
RRPEGYNQML SGFQPVKDAH NSFYFSCPIS GNRSNTWDTT NARYPVQQAN RNMLPGTCSL  540
MPDNNTVLGM NQHSYLTMPD TAFPHRTENG NFSRNGAFTS LQGRGLDQNL GWCGNIDSSS  600
SPTLIKPRPL VIDNDVQKTK GPSFKLFGIP LDSPAKPELL LSPPSVTYDG KLQISPSENR  660
NQLDLVELGN CPDPSKIVKP LDGPQPDPTM ENNQPCQEAI QNIQNKVQNC STRSCKKVHK  720
QGNALGRSVD LTKFTCYDEF VAELDQMFDF DGELSSPRKN WLVVYTDNDG DMMLVGDDPW  780
NEFCNIVHKI FIYTREEIER MNPGALNSKS EDSLPNSLGR GASKELQGGP STSSLDSENC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-169	10	378	2	354	Auxin response factor 1
4ldw_A	1e-169	10	378	2	354	Auxin response factor 1
4ldw_B	1e-169	10	378	2	354	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462958011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066544	0.0	BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds.
GenBank	JX428505	0.0	JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds.
GenBank	KJ726806	0.0	KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962662.1	0.0	auxin response factor 24
Swissprot	Q2QQX6	0.0	ARFX_ORYSJ; Auxin response factor 24
TrEMBL	K3Z3U8	0.0	K3Z3U8_SETIT; Auxin response factor
STRING	Si021216m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1178	36	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li G, et al. Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82 [PMID:24982173]