PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462956698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 563aa MW: 60480.2 Da PI: 6.9493 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.8e-16 | 431 | 482 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g 462956698 431 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 482 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.8E-4 | 350 | 402 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-7 | 365 | 397 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.282 | 367 | 396 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 367 | 396 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 431 | 482 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.33E-25 | 431 | 492 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-18 | 431 | 492 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.467 | 432 | 490 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 432 | 491 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 432 | 496 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MEAFNRGPQE TQDWNIRGMD YNGGASELSM LVGSSGGGNG KRAVEDQSEP KLEDFLGGNS 60 FVSEQDQSGG YLFSGVPMAS STNSNSGSNT MELSMIKTWL RNNQVPQPPA TTHQPPQAEE 120 MSTDASANSF ECSDSLGRNG TPPATTHQPP QAEEMSTDAS ANSFGCSDSL GRNNGTVATA 180 GSSQSLALSM STGSHQLPMV VAGGGGGSAS GAAPAASEST SSENKRASGA MDSPGGGAVE 240 AVPRKSIDTF GQRTSIYRGI DGQGVMRLIY GIIVVGGRAR VARVGKFLGI AQYVHLMLLI 300 KHCVFYSSTH LLHRRISYTG RQIYNVQFIL VCMHQPTFFA LTFTFSILDR CSYIYDCDLP 360 FLFLNTGGYD KEDKAARAYD LAALKYWGTT TTTNFPIGNY EKELDEMKHM TRQEYIAYLR 420 RNSSGFSRGA SKYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF 480 RGLNAVTNFD MSRYDVKSIL ESSTLPLIGY DAAAMAVGDP YAAARTNGGG YQFSQGSAAS 540 TVSIARANGY SANNWTSPFN GMG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462956698 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955732 | 1e-176 | EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623974.1 | 1e-89 | AP2-like ethylene-responsive transcription factor PLT2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 5e-79 | AP2 family protein |