PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956626
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 301aa    MW: 33664.2 Da    PI: 10.1145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956626genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-1458106148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd  l+ ++ ++G+g +W   ++++g++R++k+c++rw++yl
        462956626  58 KGPWAAEEDAVLKAYIDEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 106
                      79*********************************************97 PP
2Myb_DNA-binding38.82.2e-12113155246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eE   +  +    G++ W+tIa+ ++ gRt++++k++w++
        462956626 113 GGFTEEENRVICSLYISIGSR-WSTIAAQLP-GRTDNDVKNHWNT 155
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.69953106IPR017930Myb domain
SuperFamilySSF466891.6E-2556153IPR009057Homeodomain-like
SMARTSM007173.4E-1057108IPR001005SANT/Myb domain
PfamPF002493.2E-1258106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2259113IPR009057Homeodomain-like
CDDcd001671.47E-660106No hitNo description
PROSITE profilePS5129420.21107161IPR017930Myb domain
SMARTSM007172.5E-9111159IPR001005SANT/Myb domain
PfamPF002497.4E-10113155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-21114161IPR009057Homeodomain-like
CDDcd001671.13E-6117157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
INVQPVLKAS ISHTPPFPSH SRARELDLTI ARKSREQRPA EEREMGRAPC CDKATVKKGP  60
WAAEEDAVLK AYIDEHGTGG NWIQLPHKIG LNRCGKSCRL RWLNYLRPNI RHGGFTEEEN  120
RVICSLYISI GSRWSTIAAQ LPGRTDNDVK NHWNTKLKRR LFGGGRRPRL EARLLLTDVV  180
ASSQRTSLAA SALERMQLGM RMHRRHERLE SSPAFTLYNY SSLGAPMWPS PSPSPSPSPA  240
VSDSSEAQLP AATSPWHSGF WPRMQSSFSY ACAGVQENMD GTCTPNLDSK LCIGNLWQHG  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24581617108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956626
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632601e-153BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.11e-121transcription factor MYB36-like
SwissprotQ9FKL23e-75MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3L6T8501e-123A0A3L6T850_PANMI; Transcription factor MYB35-like
STRINGPavir.Aa03183.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-71myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]