PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462956375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 303aa MW: 33656 Da PI: 5.1413 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.2 | 1.8e-07 | 114 | 133 | 3 | 23 |
AP2 3 ykGVrwdkkrgrWvAeIrdps 23 y+GVr +k +g+W+AeIr p 462956375 114 YRGVRLRK-WGKWAAEIRNPF 133 9*****99.*********953 PP | |||||||
2 | AP2 | 43.6 | 7.2e-14 | 142 | 185 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 y+GVr +k +g+W+AeIr + + kr +lg+f+ta A a+ a 462956375 142 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDTAAAASTAYLSAS 185 9*****99.**********55.....45**********999999997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-5 | 113 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.441 | 113 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-8 | 113 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-8 | 114 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.187 | 141 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-15 | 141 | 190 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 141 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-11 | 141 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-8 | 141 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-17 | 142 | 188 | No hit | No description |
PRINTS | PR00367 | 4.3E-8 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAPLNHQQML IKKALAKKPS KTKRISGFGL KPSTGLLKAK SQPPPAAMAQ PRRRVRILFE 60 DPYATDSDSD DEEAGPPKSK RFSFELFVGK ATPKPVMPAA AVAANTSGGQ PESYRGVRLR 120 KWGKWAAEIR NPFTGKRQPE SYRGVRLRKW GKWAAEIRNP FTGKRQWLGT FDTAAAASTA 180 YLSASRSFAE EKRRRQPAPT PIPPATDAAQ LPDDPEFYQD LLRGLQLPDI DPLDFRAGLD 240 ALDVSEVPFG LDDDQDLLLG DFGDEELELD LDLDDIDDVF PEMSGYDLGR GMDDFLQTVD 300 FCV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462956375 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968058.1 | 1e-123 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_025817249.1 | 1e-123 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A0A9TUH9 | 1e-124 | A0A0A9TUH9_ARUDO; Uncharacterized protein | ||||
STRING | Si002186m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12930 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 3e-12 | ERF family protein |