PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462956231

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 317aa MW: 35443.6 Da PI: 6.8923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462956231	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.5	1.9e-34	2	102	43	129
NAM 43 ePwdLpk..............kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +Pw+L k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap+g+k+dW+mheyr 462956231 2 HPWTLAGrkpdcntenpsekcKIGSeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYR 100 78888633567777777765544442556************************************.999*************************** PP NAM 128 le 129 le 462956231 101 LE 102 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.49	1	122	IPR003441	NAC domain
Pfam	PF02365	1.2E-15	18	101	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-38	22	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MHPWTLAGRK PDCNTENPSE KCKIGSEEQN EWYFFSHKDK KYPTGTRTNR ATTAGFWKAT 60 GRDKPIYVKN CLVGMRKTLV FYKGRAPNGQ KSDWIMHEYR LETNENGIPH EEGWVVCRVF 120 RKRLATVQRM AGDSPYWFND HGGFMAPPEL GGSPMQGAGA RRLANAGNHA PPAGHPSYPA 180 CKVELEYHHL LPQDHLLQLP QLASPNKVPD LIGSVATLQP CSLTQEQCIS RYTEQELQAE 240 QVYMTAGDAS GADWRALDKF VASQLIHGDA TPKESTSYSN PVQMFQQAEE KEAASDYVST 300 SASCGGENDF YSNSQFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	29	123	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	29	123	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	29	123	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	29	123	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	29	123	73	169	NAC domain-containing protein 19
3swm_B	1e-29	29	123	73	169	NAC domain-containing protein 19
3swm_C	1e-29	29	123	73	169	NAC domain-containing protein 19
3swm_D	1e-29	29	123	73	169	NAC domain-containing protein 19
3swp_A	1e-29	29	123	73	169	NAC domain-containing protein 19
3swp_B	1e-29	29	123	73	169	NAC domain-containing protein 19
3swp_C	1e-29	29	123	73	169	NAC domain-containing protein 19
3swp_D	1e-29	29	123	73	169	NAC domain-containing protein 19
4dul_A	1e-29	29	123	70	166	NAC domain-containing protein 19
4dul_B	1e-29	29	123	70	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462956231

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075088	1e-134	KT075088.1 Panicum virgatum secondary wall NAC master switch (SWN6A) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448236.1	1e-160	NAC domain-containing protein 7
Swissprot	Q9FWX2	5e-84	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	C5YCY6	1e-159	C5YCY6_SORBI; Uncharacterized protein
STRING	Sb06g023780.1	1e-159	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	2e-65	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]