PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462956095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10995.8 Da PI: 10.5289 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 14 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +g+WT+eEde+lv ++k++G g+W+t ++ gRt++++k++w+++ 462956095 14 KGPWTPEEDEKLVAYIKKHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65 79********************9987666555555555************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 5 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.66E-18 | 8 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.142 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-16 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 14 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-16 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MGRAPCCDKS GLKKGPWTPE EDEKLVAYIK KHGQGNWRTL PKNAAIAARL PGRTDNEIKN 60 YWNTHIRKRL LRMGIDPVTH APRLDLLDLS SLLKPAAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462956095 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 5e-70 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657827.1 | 6e-54 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9LDR8 | 1e-49 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A445BB68 | 3e-56 | A0A445BB68_ARAHY; Uncharacterized protein | ||||
STRING | Pavir.J38204.1.p | 2e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-45 | MYB-like 102 |
Publications ? help Back to Top | |||
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