PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462955627
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 899aa    MW: 98989.4 Da    PI: 6.9411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462955627genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.51.7e-16110160656
                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++++q+ eLe+lF+++++p++e+r+ L +k+g+  +q+k+WFqN+R + k
  462955627 110 RHKAQQILELETLFQSCSHPDEEMRRALGAKIGMGSQQIKNWFQNKRSQNK 160
                5789*******************************************9987 PP
2START68.12.6e-222654493164
                HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                ae+a++e++ + +a++p+W  s+  + +n+ e++  + ++        + +ea r++++v +++++lv  l d + +W+++++    +++  +v ssg  
  462955627 265 AERAMKEFQELTAAGAPLWLASAdgDVLNYREYTPFVFPGMLgpcpqgFVSEATRECAIVWGTAVDLVDVLTDPG-RWSKMFPgivaAVSARDVGSSGtf 363
                799********************99999999999999887669999999*******************9999999.*******998888888888888** PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTCEEEE CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksnghskv 164
                    g +qlm+ael + sp  p R + f+R+ +  +++ ++++vdvSvd    ++      ++  R++llpSg+lie ++  ++kv
  462955627 364 ssrdGLIQLMNAELWVQSPRMPnRSVKFLRFAKMmENGRQFAVVDVSVDGILGQEGrvepPAQNTRCRLLPSGCLIENMGSDYCKV 449
                **********************************99999*********9644444333457899*********************9 PP
3START88.81.1e-2846062340205
                SS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS-- CS
      START  40 skvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkpp 137
                +++  +ea r++++v +++++lv  l d + +W+++++   +++++s       m+ael + sp  p R + f+R+ +  +++ ++++vdvSvd    ++
  462955627 460 QGF-VSEATRECAIVWGTAVDLVDVLTDPG-RWSKMFP--GIVAAVSAR----DMNAELWVQSPRMPnRSVKFLRFAKMmENGRQFAVVDVSVDGILGQE 551
                444.89*****************9999999.*******..666666654....466666666666677***********99999*********9644444 PP

                .....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
      START 138 e....sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      ++  R++llpSg+lie ++  ++kvtw+ h++++++++  l+++l++sg+a ga++w+  l+rqce
  462955627 552 GrvepPAQNTRCRLLPSGCLIENMGSDYCKVTWIVHAEYDEATVVPLFKPLLRSGQALGARRWLPVLKRQCE 623
                333457899**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-1592156IPR009057Homeodomain-like
SuperFamilySSF466895.13E-13100160IPR009057Homeodomain-like
PROSITE profilePS5007113.426102162IPR001356Homeobox domain
SMARTSM003892.6E-11105166IPR001356Homeobox domain
CDDcd000861.46E-11107160No hitNo description
PfamPF000466.0E-14110160IPR001356Homeobox domain
PROSITE profilePS5084826.833254627IPR002913START domain
SuperFamilySSF559611.69E-15262455No hitNo description
PfamPF018521.0E-15265449IPR002913START domain
SMARTSM002341.7E-4401624IPR002913START domain
PfamPF018525.0E-23460623IPR002913START domain
SuperFamilySSF559613.93E-19461623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MQYWPDGSLF NFARVLLWRA HFPRGQAKTR TRRREVTMEN NEGTENNNNG HDLNIAIETD  60
ENTDHLIWNY QEYDFDALLG DDDNDASNDH DAEGGRDNGP ESEASSKTKR HKAQQILELE  120
TLFQSCSHPD EEMRRALGAK IGMGSQQIKN WFQNKRSQNK LKSCWDENRE IRSINTVLQA  180
ENVQLRQRIL DRSCFSCHCQ MAPPEQLSEK QRLLIEHARL KEQYLRAEAT LRELIRGAQL  240
PLAAPSVIIA GTGDGNHGTL LLQHAERAMK EFQELTAAGA PLWLASADGD VLNYREYTPF  300
VFPGMLGPCP QGFVSEATRE CAIVWGTAVD LVDVLTDPGR WSKMFPGIVA AVSARDVGSS  360
GTFSSRDGLI QLMNAELWVQ SPRMPNRSVK FLRFAKMMEN GRQFAVVDVS VDGILGQEGR  420
VEPPAQNTRC RLLPSGCLIE NMGSDYCKVL FQNSQHPCPQ GFVSEATREC AIVWGTAVDL  480
VDVLTDPGRW SKMFPGIVAA VSARDMNAEL WVQSPRMPNR SVKFLRFAKM MENGRQFAVV  540
DVSVDGILGQ EGRVEPPAQN TRCRLLPSGC LIENMGSDYC KVTWIVHAEY DEATVVPLFK  600
PLLRSGQALG ARRWLPVLKR QCEYMGVLKN FPAGDGRKGV MEIAQRMTAS FYAAISGPVT  660
LPGSRIKEWR GTGTGVPVRM AIWNSAGAVP GHPDSRVLSA TTTVWLPSTQ PRVVLDYLRN  720
ERRRGEWDVL ANGASVKELG RIITGNVYGN AISILRPNLT ADGTNNNKRL ILQEACSDPS  780
CSLVVYSPIE KNVMLAIMRG DNPINGFILP SGFAILPDGY RTPRASSSSL SATSTSTAPS  840
GGNTTTSGCF LTAAYQTLWS GPPADDNLAA GAFDAIGKQL CNAIENIKAA VGAEVIIPA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462955627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156326.11e-139uncharacterized protein LOC100383907 isoform X2
TrEMBLA0A1E5WKZ31e-145A0A1E5WKZ3_9POAL; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGSi032393m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.13e-76homeodomain GLABROUS 1