PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462955541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18201.5 Da PI: 10.96 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.3 | 7.2e-37 | 19 | 111 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg d++ s 462955541 19 LPPGFRFHPTDEELVVHYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPEKALFGRREWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADRRSSS 111 79****************************.88***************88778999********************************997655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-41 | 15 | 107 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.305 | 19 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-17 | 20 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVAAAEGSGR RDAEAELNLP PGFRFHPTDE ELVVHYLCRK VARQQLPVPI IAEVDLYKFD 60 PWDLPEKALF GRREWYFFTP RDRKYPNGSR PNRAAGRGYW KATGADRRSS STPARRPGAS 120 RPTGSCTSTA SPTPTAHPPR RGPRSWTSGC CAGCTTRRTT GRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-61 | 11 | 107 | 7 | 103 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | PRRGPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462955541 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017003 | 1e-118 | KM017003.1 Miscanthus lutarioriparius NAC4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308570.1 | 2e-71 | NAC protein isoform 1 | ||||
Refseq | XP_002458677.1 | 3e-71 | NAC domain-containing protein 68 | ||||
Refseq | XP_004970362.1 | 2e-71 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 1e-69 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0F7GJC9 | 5e-70 | A0A0F7GJC9_MAIZE; NAC protein | ||||
TrEMBL | C5XN76 | 7e-70 | C5XN76_SORBI; NAC52 | ||||
TrEMBL | K3XKG3 | 4e-70 | K3XKG3_SETIT; Uncharacterized protein | ||||
STRING | Si002386m | 6e-71 | (Setaria italica) | ||||
STRING | Sb03g037940.1 | 1e-70 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14845 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-53 | NAC family protein |