PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462955422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | FAR1 | ||||||||
Protein Properties | Length: 433aa MW: 46542.3 Da PI: 8.0157 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.3 | 8.8e-07 | 148 | 191 | 1 | 45 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 +fYn Y+ e+GF +r +++ k+ ++itk++ +Cs++ r ++ 462955422 148 EFYNLYSWELGFGIRWNRNAKN-SGKSITKQDICCSCQKPRVKKG 191 6*****************9999.7777*********998776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50966 | 9.223 | 249 | 285 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MASIPAGDDG LRARAELSRR AGDVSGATAA APDVRSEGVS GAVPRAMFTE GVGGGGLASG 60 GGGTEGAQDR GPASNGGGSV QAVGSGGAQG SGWVRRPRFG SIPDERVPQA GRVSAYEQSL 120 RNYAEKKSSV VMNPAVGTSF DSRAEAYEFY NLYSWELGFG IRWNRNAKNS GKSITKQDIC 180 CSCQKPRVKK GVPIEEHAAK VYTRAMFEKF GETIFESGSY VVDEKEKGKA YSVRHIRSDH 240 QESWSQLEFQ VIIRAEDRAV ICECGLGKHM GMPCCHAVKV MIHLGMQEIP SGNIVRRWTR 300 NARDISLDHL IEHQEDMTPG MLRALKYAAL YVAAMEVVNL GLSSNHAFEI AMTGLTQAKQ 360 QVLESSRVKD GIGLAEQRCP SAEQGSDPSS DVQDVSAVTT DDGTSAAQKL SLETKVSGRK 420 RKLLSHMQAD NPQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462955422 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459424.2 | 6e-66 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A0A9R7V7 | 1e-102 | A0A0A9R7V7_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A2T7ELD8 | 1e-102 | A0A2T7ELD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03654.1.p | 9e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 4e-13 | FAR1-related sequence 12 |